Browse Element(s) Details


Os.53629.1.S1_x_at

Description gb:AK073656.1
DB_XREF= gi:32983679
TID=Os.53629.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53629 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033052H14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033052H14, full insert sequence.
FL= gb:AK073656.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5731011/11Resistance protein, putative, expressed
LOC_Os04g126392/11carboxyl-terminal proteinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57270Os.2449.1.S1_s_at11/112+35080221..35084790Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g57290Os.35294.1.S1_at11/112+35085325..35093422Cytochrome P450 family protein, expressed
LOC_Os02g57280Os.12129.1.S1_a_at11/112+35086471..35088446CBS domain containing protein, expressed
LOC_Os02g57300OsAffx.3092.1.S1_at11/112+35094388..35094906hypothetical protein
LOC_Os02g57310Os.53629.1.S1_x_at11/112+35107768..35112900Resistance protein, putative, expressed
LOC_Os02g57310Os.35493.1.S1_at11/112+35107768..35112900Resistance protein, putative, expressed
LOC_Os02g57310Os.51470.1.S1_at11/112+35107768..35112900Resistance protein, putative, expressed
LOC_Os02g57310Os.53629.1.S1_at11/112+35107768..35112900Resistance protein, putative, expressed
LOC_Os02g57330OsAffx.24904.1.S1_at11/112+35114296..35116876expressed protein
LOC_Os02g57340OsAffx.12679.1.S1_at11/112+35117042..35120427pentatricopeptide, putative, expressed
LOC_Os02g57350Os.55392.1.S1_at11/112+35124805..35126008heavy metal-associated domain containing protein, expressed
LOC_Os02g57360OsAffx.24905.1.S1_at11/112+35127243..35129219heavy metal-associated domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53629.1.S1_x_at--998--1532Chr04:6979358..6979382 (25 bp)
AGCATCGTCGCGGTGGCTAGGCACC
LOC_Os04g12639
Os.53629.1.S1_x_at--739--8873Chr08:15140105..15140129 (25 bp)
TGATGGCGGCGAGCTCCTAGCCGTC
NONE
Os.53629.1.S1_x_at--115--10391Chr02:35110484..35110508 (25 bp)
TTTTCTTTTATCCTTGCCACTGACA
LOC_Os02g57310
Os.53629.1.S1_x_at--909--10411Chr02:35110477..35110501 (25 bp)
TTATCCTTGCCACTGACAGGTGGGT
LOC_Os02g57310
Os.53629.1.S1_x_at--918--8571Chr02:35110324..35110348 (25 bp)
TGGTTGAGGGATGGTATTCATACAC
LOC_Os02g57310
Os.53629.1.S1_x_at--43--7673Chr11:2643234..2643293 (24 bp)
GGGATAGTGGACTTATTCCTTTGTG
NONE
Os.53629.1.S1_x_at--753--2291Chr02:35110223..35110247 (25 bp)
AAAGGGCCTTAGGTTGCTGGAGGTG
LOC_Os02g57310
Os.53629.1.S1_x_at--125--1111Chr02:35110177..35110201 (25 bp)
AGTGGTCATCGATGCAGGCGACGCT
LOC_Os02g57310
Os.53629.1.S1_x_at--900--891Chr02:35110162..35110186 (25 bp)
AGGCGACGCTTTCTGTATGCTACAG
LOC_Os02g57310
Os.53629.1.S1_x_at--898--6911Chr02:35110148..35110172 (25 bp)
GTATGCTACAGCCTATAGGTGGAAA
LOC_Os02g57310
Os.53629.1.S1_x_at--236--7731Chr02:35110131..35110155 (25 bp)
GGTGGAAAACGAAGGTCATCTGAAA
LOC_Os02g57310
Target Sequence 
AGCATCGTCGCGGTGGCTAGGCACCGTGATGGCGGCGAGCTCCTAGCCGTCGGGATCGGCCGGAGGAGCGAGAGAAGAAG
AGAAGTGTGGTTGATAGTGGGCCCCACCATTTTTCTTTTATCCTTGCCACTGACAGGTGGGTCCCACCTGCTGACTCAGC
AAGTCAACAGGGTCAAAGATGCCACGTAGGACAAAACCGCCTCCAAAACCACCCGGGGAGTTGATTTGCAACGGTTTTCG
GAGTTGGGGGACGGGTTATACCTGGTTTTGTGGTTGAGGGATGGTATTCATACACGGCCATGTTGAGGGAGGGATAGTGG
ACTTATTCCTTTGTGTGTGTGTGTGTTGGTGTTGGGGGGGGGGGGGGGGCAAAAGGGCCTTAGGTTGCTGGAGGTGGAGG
TGGGCCGCCGGGAACGGAGTGGTCATCGATGCAGGCGACGCTTTCTGTATGCTACAGCCTATAGGTGGAAAACGAAGGTC
ATCTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53629.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis