Browse Element(s) Details


Os.55392.1.S1_at

Description gb:AK107997.1
DB_XREF= gi:32993206
TID=Os.55392.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55392 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-135-G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-G02, full insert sequence.
FL= gb:AK107997.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5735011/11heavy metal-associated domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57310Os.53629.1.S1_x_at11/112+35107768..35112900Resistance protein, putative, expressed
LOC_Os02g57310Os.35493.1.S1_at11/112+35107768..35112900Resistance protein, putative, expressed
LOC_Os02g57310Os.51470.1.S1_at11/112+35107768..35112900Resistance protein, putative, expressed
LOC_Os02g57310Os.53629.1.S1_at11/112+35107768..35112900Resistance protein, putative, expressed
LOC_Os02g57330OsAffx.24904.1.S1_at11/112+35114296..35116876expressed protein
LOC_Os02g57340OsAffx.12679.1.S1_at11/112+35117042..35120427pentatricopeptide, putative, expressed
LOC_Os02g57350Os.55392.1.S1_at11/112+35124805..35126008heavy metal-associated domain containing protein, expressed
LOC_Os02g57360OsAffx.24905.1.S1_at11/112+35127243..35129219heavy metal-associated domain containing protein, expressed
LOC_Os02g57370Os.8132.1.S1_at11/112+35149792..35152853Zinc finger DHHC domain containing protein 15 homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55392.1.S1_at--192--5691Chr02:35125527..35125551 (25 bp)
GACTTACCCTGCAGGCGGCTTGGTC
LOC_Os02g57350
Os.55392.1.S1_at--550--3971Chr02:35125581..35125605 (25 bp)
CGGTCAGCAGCTGCTCGGCAATGGC
LOC_Os02g57350
Os.55392.1.S1_at--166--4671Chr02:35125610..35125634 (25 bp)
GCGTGGTGTCGCCATGGTACACTCA
LOC_Os02g57350
Os.55392.1.S1_at--288--8591Chr02:35125624..35125648 (25 bp)
TGGTACACTCATGGCTACTAGCTTA
LOC_Os02g57350
Os.55392.1.S1_at--28--9951Chr02:35125703..35125727 (25 bp)
TACGAGCTAGTACTTGTATCCAGAT
LOC_Os02g57350
Os.55392.1.S1_at--344--6391Chr02:35125742..35125766 (25 bp)
GATCGAGCAGGAGAGTACTCCAGTT
LOC_Os02g57350
Os.55392.1.S1_at--542--2871Chr02:35125848..35125872 (25 bp)
AAGTGTGTTAAATCTCTGTCTCATC
LOC_Os02g57350
Os.55392.1.S1_at--595--2271Chr02:35125857..35125881 (25 bp)
AAATCTCTGTCTCATCGGAACTGAT
LOC_Os02g57350
Os.55392.1.S1_at--434--1471Chr02:35125894..35125918 (25 bp)
AGAATCGCGATCGTATTCGGCTGGC
LOC_Os02g57350
Os.55392.1.S1_at--659--511Chr02:35125903..35125927 (25 bp)
ATCGTATTCGGCTGGCAGTTGCCAC
LOC_Os02g57350
Os.55392.1.S1_at--971--771Chr02:35125958..35125982 (25 bp)
ATGTGCTAGTATGCTATACGACGAA
LOC_Os02g57350
Target Sequence 
GACTTACCCTGCAGGCGGCTTGGTCTACCCCTACGCGGCGGCGTATCCACCTCCCGGTCAGCAGCTGCTCGGCAATGGCG
GCGGCGTGGTGTCGCCATGGTACACTCATGGCTACTAGCTTAGTAGTACACTAATTCGTAGTATTAGCGATGTTTGTTTT
GTAATTAGTGATACAGTACGAGCTAGTACTTGTATCCAGATGAGTATCAGTAGTGGATCGAGCAGGAGAGTACTCCAGTT
AGTAATGGTGGTTGTCATCTATAGTTAATTTTGGTGGGGTGATGAGGCTCATGTGTGAGCACATGTAGTGGTGGTTATAA
CAAGTGTGTTAAATCTCTGTCTCATCGGAACTGATGGTATTATACGTAGAATCGCGATCGTATTCGGCTGGCAGTTGCCA
CCTTCCCCCTGTTTGAAATCATCATCATACAATGTGCTAGTATGCTATACGACGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55392.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis