Browse Element(s) Details


Os.8132.1.S1_at

Description gb:AK100156.1
DB_XREF= gi:32985365
TID=Os.8132.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8132 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023019I03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023019I03, full insert sequence.
FL= gb:AK100156.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5737011/11Zinc finger DHHC domain containing protein 15 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57350Os.55392.1.S1_at11/112+35124805..35126008heavy metal-associated domain containing protein, expressed
LOC_Os02g57360OsAffx.24905.1.S1_at11/112+35127243..35129219heavy metal-associated domain containing protein, expressed
LOC_Os02g57370Os.8132.1.S1_at11/112+35149792..35152853Zinc finger DHHC domain containing protein 15 homolog, putative, expressed
LOC_Os02g57380Os.54214.1.S1_at11/112+35153098..35155675Thioredoxin-like 8, chloroplast precursor, putative, expressed
LOC_Os02g57390Os.5424.1.S1_at11/112+35157621..35162467Pumilio/Mpt5 family RNA-binding protein, putative, expressed
LOC_Os02g57400Os.11176.1.S1_at11/112+35164546..351693852-phosphoglycerate kinase, putative, expressed
LOC_Os02g57410Os.9768.1.S2_at11/112+35172389..35178289OTU-like cysteine protease family protein, expressed
LOC_Os02g57410Os.9768.1.S1_a_at11/112+35172389..35178289OTU-like cysteine protease family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8132.1.S1_at--303--8531Chr02:35152145..35152169 (25 bp)
TGGACAGAAGTATCGGCACCGCTTT
LOC_Os02g57370
Os.8132.1.S1_at--446--1791Chr02:35152162..35152186 (25 bp)
ACCGCTTTGATCTTGGCACACGAAA
LOC_Os02g57370
Os.8132.1.S1_at--32--8851Chr02:35152361..35152384 (24 bp)
TGATCATGGGCCCAAACATCCTGTG
LOC_Os02g57370
Os.8132.1.S1_at--983--6231Chr02:35152419..35152443 (25 bp)
GATGGCACTGAGTTCCAGATCACAA
LOC_Os02g57370
Os.8132.1.S1_at--72--5191Chr02:35152468..35152492 (25 bp)
GCAATTGCTGCACACGTACATACTT
LOC_Os02g57370
Os.8132.1.S1_at--899--6451Chr02:35152508..35152532 (25 bp)
GATTTGCGAGTTTATTTGGCGACCA
LOC_Os02g57370
Os.8132.1.S1_at--514--10871Chr02:35152523..35152547 (25 bp)
TTGGCGACCAAAGTTCTTGGCCGTT
LOC_Os02g57370
Os.8132.1.S1_at--276--8471Chr02:35152540..35152564 (25 bp)
TGGCCGTTCCATTTGCTTGTTGCAG
LOC_Os02g57370
Os.8132.1.S1_at--363--1371Chr02:35152568..35152592 (25 bp)
AGAGCTCCACATTTGTCACCAGAAT
LOC_Os02g57370
Os.8132.1.S1_at--94--3751Chr02:35152630..35152654 (25 bp)
CTAATCTCCATGTATTCTCTTGCTT
LOC_Os02g57370
Os.8132.1.S1_at--237--10531Chr02:35152757..35152781 (25 bp)
TTCATGTCAATTTCGCTTATTCGGG
LOC_Os02g57370
Target Sequence 
TGGACAGAAGTATCGGCACCGCTTTGATCTTGGCACACGAAAGAATATTCAAATGATCATGGGCCCAAACATCCTGTGCT
GGCTTTGCCCTACTGCAACGGGGCATCTCAAGGATGGCACTGAGTTCCAGATCACAAACAACTGATCGGATCAACAAGGA
AGCAATTGCTGCACACGTACATACTTCATACATACATTGTAGATTTGCGAGTTTATTTGGCGACCAAAGTTCTTGGCCGT
TCCATTTGCTTGTTGCAGTAGAGAGCTCCACATTTGTCACCAGAATCTTTGTATGACAGCATGTGAAATGTTCCATTTCC
CTCCTAATCTCCATGTATTCTCTTGCTTCAATTTATTTGTGTGCAGAGCTGTAGATAGATCAAGTGATTTGAGTTTTGAG
CATTGTGTACTGACATATTGAACGGCAAAACTATCAATTTGACCAGAATTTTCATGTCAATTTCGCTTATTCGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8132.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis