Browse Element(s) Details


Os.54214.1.S1_at

Description gb:AK102564.1
DB_XREF= gi:32987773
TID=Os.54214.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54214 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033097K15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033097K15, full insert sequence.
FL= gb:AK102564.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5738011/11Thioredoxin-like 8, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57360OsAffx.24905.1.S1_at11/112+35127243..35129219heavy metal-associated domain containing protein, expressed
LOC_Os02g57370Os.8132.1.S1_at11/112+35149792..35152853Zinc finger DHHC domain containing protein 15 homolog, putative, expressed
LOC_Os02g57380Os.54214.1.S1_at11/112+35153098..35155675Thioredoxin-like 8, chloroplast precursor, putative, expressed
LOC_Os02g57390Os.5424.1.S1_at11/112+35157621..35162467Pumilio/Mpt5 family RNA-binding protein, putative, expressed
LOC_Os02g57400Os.11176.1.S1_at11/112+35164546..351693852-phosphoglycerate kinase, putative, expressed
LOC_Os02g57410Os.9768.1.S2_at11/112+35172389..35178289OTU-like cysteine protease family protein, expressed
LOC_Os02g57410Os.9768.1.S1_a_at11/112+35172389..35178289OTU-like cysteine protease family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54214.1.S1_at--777--2651Chr02:35155150..35155174 (25 bp)
AAGCCAGTATGAACTCCTTTCAAGA
LOC_Os02g57380
Os.54214.1.S1_at--709--5211Chr02:35155199..35155223 (25 bp)
GAATCGACGAAATTACTACCTCTAC
LOC_Os02g57380
Os.54214.1.S1_at--413--3091Chr02:35155229..35155253 (25 bp)
AATAGGCACTACTACACAAGGCAGC
LOC_Os02g57380
Os.54214.1.S1_at--880--2931Chr02:35155246..35155270 (25 bp)
AAGGCAGCATTTCAATCGTGTTCTC
LOC_Os02g57380
Os.54214.1.S1_at--771--3171Chr02:35155258..35155282 (25 bp)
CAATCGTGTTCTCTCCAAATTTGGG
LOC_Os02g57380
Os.54214.1.S1_at--1137--5211Chr02:35155290..35155314 (25 bp)
GAATTTCACAACCTGTGGCTGCATT
LOC_Os02g57380
Os.54214.1.S1_at--800--91Chr02:35155312..35155336 (25 bp)
ATTCCTGTGGTGTCCTTGATGTATC
LOC_Os02g57380
Os.54214.1.S1_at--184--1411Chr02:35155375..35155399 (25 bp)
AGACTTCTTGCTCATGTACTGTCAC
LOC_Os02g57380
Os.54214.1.S1_at--154--9931Chr02:35155391..35155415 (25 bp)
TACTGTCACAGTACGGGCAAGCATT
LOC_Os02g57380
Os.54214.1.S1_at--314--7911Chr02:35155484..35155508 (25 bp)
GGTTCCAAATCCATATGCTGCACAA
LOC_Os02g57380
Os.54214.1.S1_at--997--5011Chr02:35155570..35155594 (25 bp)
GCAGGTGTTGCTAGTTTTGTTCAGA
LOC_Os02g57380
Target Sequence 
AAGCCAGTATGAACTCCTTTCAAGAGATCGAGCCATATATTTAAGTATCGAATCGACGAAATTACTACCTCTACAGTCAA
ATAGGCACTACTACACAAGGCAGCATTTCAATCGTGTTCTCTCCAAATTTGGGGTCGACAGAATTTCACAACCTGTGGCT
GCATTCCTGTGGTGTCCTTGATGTATCCATGTGTCTTGTTTGGAAATCTATGCAATTAAAGGCAAAGACTTCTTGCTCAT
GTACTGTCACAGTACGGGCAAGCATTTAAATTAGTCATTAGATGACAATAATATTTAGTCAATGAGCCTTCAGAGGGCAT
GTTGAAAGTGTTATGGTTCCAAATCCATATGCTGCACAACTGTGATTGACTTGAACTACTAGTACTACAAAAGATAGCTA
CAGTGTCAGCCTTTTGCAAAGCAGGTGTTGCTAGTTTTGTTCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54214.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis