Browse Element(s) Details


Os.51470.1.S1_at

Description gb:AK062881.1
DB_XREF= gi:32972899
TID=Os.51470.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51470 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-108-D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-108-D05, full insert sequence.
FL= gb:AK062881.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5731011/11Resistance protein, putative, expressed
LOC_Os06g406201/11SNF7 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57270Os.2449.1.S1_s_at11/112+35080221..35084790Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g57290Os.35294.1.S1_at11/112+35085325..35093422Cytochrome P450 family protein, expressed
LOC_Os02g57280Os.12129.1.S1_a_at11/112+35086471..35088446CBS domain containing protein, expressed
LOC_Os02g57300OsAffx.3092.1.S1_at11/112+35094388..35094906hypothetical protein
LOC_Os02g57310Os.53629.1.S1_x_at11/112+35107768..35112900Resistance protein, putative, expressed
LOC_Os02g57310Os.35493.1.S1_at11/112+35107768..35112900Resistance protein, putative, expressed
LOC_Os02g57310Os.51470.1.S1_at11/112+35107768..35112900Resistance protein, putative, expressed
LOC_Os02g57310Os.53629.1.S1_at11/112+35107768..35112900Resistance protein, putative, expressed
LOC_Os02g57330OsAffx.24904.1.S1_at11/112+35114296..35116876expressed protein
LOC_Os02g57340OsAffx.12679.1.S1_at11/112+35117042..35120427pentatricopeptide, putative, expressed
LOC_Os02g57350Os.55392.1.S1_at11/112+35124805..35126008heavy metal-associated domain containing protein, expressed
LOC_Os02g57360OsAffx.24905.1.S1_at11/112+35127243..35129219heavy metal-associated domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51470.1.S1_at--845--8431Chr02:35112737..35112761 (25 bp)
GGCCACAGAAGGTGTAGTAGTACTT
LOC_Os02g57310
Os.51470.1.S1_at--563--6931Chr02:35112721..35112745 (25 bp)
GTAGTACTTCATACATTTCGAGCAG
LOC_Os02g57310
Os.51470.1.S1_at--12--211Chr02:35112707..35112731 (25 bp)
ATTTCGAGCAGTTTCTTTCAGATTG
LOC_Os02g57310
Os.51470.1.S1_at--88--10071Chr02:35112601..35112625 (25 bp)
TAGTGTTGGTACTCACAGTCAGAAC
LOC_Os02g57310
Os.51470.1.S1_at--663--3691Chr02:35112570..35112594 (25 bp)
CTATTTTGCATCACATTTGCCTTGT
LOC_Os02g57310
Os.51470.1.S1_at--470--6551Chr02:35112503..35112527 (25 bp)
GATTATAGATCCACCCCTGATTTGA
LOC_Os02g57310
Os.51470.1.S1_at--955--7831Chr02:35112461..35112485 (25 bp)
GGTACTGCCAATTGCCTGGATGAAC
LOC_Os02g57310
Os.51470.1.S1_at--46--8571Chr02:35112445..35112469 (25 bp)
TGGATGAACACCAGCCCATTTGCTC
LOC_Os02g57310
Os.51470.1.S1_at--1037--10292Chr06:24221692..24221712 (21 bp)
TTTCCCTGTATTTTACTAGCTGCCG
LOC_Os06g40620
Os.51470.1.S1_at--878--3711Chr02:35112387..35112411 (25 bp)
CTAGCTGCCGTAGCTGGAACACAAT
LOC_Os02g57310
Os.51470.1.S1_at--46--5511Chr02:35112371..35112395 (25 bp)
GAACACAATTCCCTTTCAAGATGTC
LOC_Os02g57310
Target Sequence 
GGCCACAGAAGGTGTAGTAGTACTTCATACATTTCGAGCAGTTTCTTTCAGATTGTTTGTTTTTGAGCTTCTAATTTTGG
GATGCATTAGATAGTGATGAAAGCCTAAGAGTCGGTAATATGACTTATTGGAATTTTAGTGTTGGTACTCACAGTCAGAA
CATACTCCTATTTTGCATCACATTTGCCTTGTGCGTGCTGCTGGTCTGTTCCACTCGTGAACATCAGACGCGAAGATTAT
AGATCCACCCCTGATTTGAAGGTGTTCACAGATTCAGGTACTGCCAATTGCCTGGATGAACACCAGCCCATTTGCTCCTT
TTCCCCTTGCGTTATTTTCCCTGTATTTTACTAGCTGCCGTAGCTGGAACACAATTCCCTTTCAAGATGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51470.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis