Browse Element(s) Details


Os.2240.1.S1_at

Description gb:U46758.1
DB_XREF= gi:1197586
GEN=KOB1
TID=Os.2240.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.2240 (NCBI UniGene Cluster)
DEF=Oryza sativa potassium channel beta subunit protein (KOB1) mRNA, complete cds.
PROD=potassium channel beta subunit protein
FL= gb:U46758.1 gb:AK072707.1 gb:AK104135.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5724011/11Voltage-gated potassium channel beta-1 subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57200Os.49569.1.S1_at11/112+35035214..35040570expressed protein
LOC_Os02g57210OsAffx.12678.1.S1_x_at11/112+35047045..35048474hypothetical protein
LOC_Os02g57220Os.18424.1.S1_at11/112+35051067..35056660Actin-related protein 2/3 complex subunit 1B, putative, expressed
LOC_Os02g57230OsAffx.29218.1.S1_s_at8/112+35057895..35061034retrotransposon protein, putative, unclassified
LOC_Os02g57230OsAffx.380.1.S1_at3/112+35057895..35061034retrotransposon protein, putative, unclassified
LOC_Os02g57230OsAffx.29576.2.S1_x_at1/112+35057895..35061034retrotransposon protein, putative, unclassified
LOC_Os02g57230OsAffx.2057.3.S1_at1/112+35057895..35061034retrotransposon protein, putative, unclassified
LOC_Os02g57230OsAffx.13325.1.S1_at1/112+35057895..35061034retrotransposon protein, putative, unclassified
LOC_Os02g57240Os.2240.1.S1_at11/112+35062109..35066743Voltage-gated potassium channel beta-1 subunit, putative, expressed
LOC_Os02g57250Os.4806.1.S1_at11/112+35067502..35069930Auxin-responsive protein IAA13, putative, expressed
LOC_Os02g57260Os.8733.1.S1_at11/112+35075010..350793303-ketoacyl-CoA thiolase 2, peroxisomal precursor, putative, expressed
LOC_Os02g57270Os.2449.1.S1_s_at11/112+35080221..35084790Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g57290Os.35294.1.S1_at11/112+35085325..35093422Cytochrome P450 family protein, expressed
LOC_Os02g57280Os.12129.1.S1_a_at11/112+35086471..35088446CBS domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0009744biological_processresponse to sucrose stimulus
GO:0003700molecular_functiontranscription factor activity
GO:0004033molecular_functionaldo-keto reductase activity
GO:0005267molecular_functionpotassium channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2240.1.S1_at--209--1451Chr02:35066072..35066096 (25 bp)
AGAACCTGGCCAACAGATCTCTGGT
LOC_Os02g57240
Os.2240.1.S1_at--77--1291Chr02:35066086..35066110 (25 bp)
AGATCTCTGGTTGACGACACACTGA
LOC_Os02g57240
Os.2240.1.S1_at--878--5911Chr02:35066143..35066167 (25 bp)
GAGCTTGGTGTTTCGTTAGCCCAAC
LOC_Os02g57240
Os.2240.1.S1_at--1139--2371Chr02:35066196..35066220 (25 bp)
AAACGTCTCATCTGTGATCACTGGA
LOC_Os02g57240
Os.2240.1.S1_at--671--2491Chr02:35066369..35066393 (25 bp)
AACATGAAGGCCCTCGATGTCATTC
LOC_Os02g57240
Os.2240.1.S1_at--808--9051Chr02:35066397..35066421 (25 bp)
TGCTAACCCCAGAAGTCGTCGACAA
LOC_Os02g57240
Os.2240.1.S1_at--438--5411Chr02:35066449..35066473 (25 bp)
GAAGCGCACCGAGTCATACAGATGA
LOC_Os02g57240
Os.2240.1.S1_at--516--6511Chr02:35066508..35066532 (25 bp)
GATTTCAGGATTTACCCGGTGGGAT
LOC_Os02g57240
Os.2240.1.S1_at--493--10871Chr02:35066571..35066595 (25 bp)
TTGGAAGCTGCTTTATGTGCCTGGG
LOC_Os02g57240
Os.2240.1.S1_at--493--7271Chr02:35066617..35066641 (25 bp)
GTCCAGTGGTACTCTGCTCTATATA
LOC_Os02g57240
Os.2240.1.S1_at--544--791Chr02:35066651..35066675 (25 bp)
ATGTGGACCACTCACTTGTTGCTGT
LOC_Os02g57240
Target Sequence 
AGAACCTGGCCAACAGATCTCTGGTTGACGACACACTGAGAAAGGTGAATGGGNTAAANCCAATTGCTTCTGAGCTTGGT
GTTTCGTTAGCCCAACTTGCTATCGCGTGGTGCGCATCGAACCCAAACGTCTCATCTGTGATCACTGGAGCCACAAAAGA
AAACCAGATTGTTGAAAACATGAAGGCCCTCGATGTCATTCCGCTGCTAACCCCAGAAGTCGTCGACAAGATCGAAGCGG
TGGTCCAAAGCAAGCCGAAGCGCACCGAGTCATACAGATGAAGCGGTACAGGGGGTGTGCAGAGTGTGCTCCAGGGATTT
CAGGATTTACCCGGTGGGATTCTTTTAGACGATATTATTATCTTCCATTGTCTTATGTTTGGAAGCTGCTTTATGTGCCT
GGGTTTGTGTAGTTGGGAAATGGTGTCCAGTGGTACTCTGCTCTATATACATTTTGTCATGTGGACCACTCACTTGTTGC
TGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2240.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis