Browse Element(s) Details


OsAffx.12678.1.S1_x_at

Description tigr:9630.m05690
TID=OsAffx.12678.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5721011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57190Os.4855.1.S1_at11/112+35022700..35034598myosin XI, putative, expressed
LOC_Os02g57200Os.49569.1.S1_at11/112+35035214..35040570expressed protein
LOC_Os02g57210OsAffx.12678.1.S1_x_at11/112+35047045..35048474hypothetical protein
LOC_Os02g57220Os.18424.1.S1_at11/112+35051067..35056660Actin-related protein 2/3 complex subunit 1B, putative, expressed
LOC_Os02g57230OsAffx.29218.1.S1_s_at8/112+35057895..35061034retrotransposon protein, putative, unclassified
LOC_Os02g57230OsAffx.380.1.S1_at3/112+35057895..35061034retrotransposon protein, putative, unclassified
LOC_Os02g57230OsAffx.29576.2.S1_x_at1/112+35057895..35061034retrotransposon protein, putative, unclassified
LOC_Os02g57230OsAffx.2057.3.S1_at1/112+35057895..35061034retrotransposon protein, putative, unclassified
LOC_Os02g57230OsAffx.13325.1.S1_at1/112+35057895..35061034retrotransposon protein, putative, unclassified
LOC_Os02g57240Os.2240.1.S1_at11/112+35062109..35066743Voltage-gated potassium channel beta-1 subunit, putative, expressed
LOC_Os02g57250Os.4806.1.S1_at11/112+35067502..35069930Auxin-responsive protein IAA13, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12678.1.S1_x_at--195--4051Chr02:35047914..35047938 (25 bp)
CGATCCGATCGAGGCGGGTTCATCA
LOC_Os02g57210
OsAffx.12678.1.S1_x_at--811--6211Chr02:35047924..35047948 (25 bp)
GAGGCGGGTTCATCACGATCGAGAA
LOC_Os02g57210
OsAffx.12678.1.S1_x_at--360--9691Chr02:35047936..35047960 (25 bp)
TCACGATCGAGAACTCGGTGGCGGA
LOC_Os02g57210
OsAffx.12678.1.S1_x_at--52--6751Chr02:35048018..35048042 (25 bp)
GTTCATCACGATGGAGAAGGGCACC
LOC_Os02g57210
OsAffx.12678.1.S1_x_at--321--831Chr02:35048028..35048052 (25 bp)
ATGGAGAAGGGCACCATCTCGTCTT
LOC_Os02g57210
OsAffx.12678.1.S1_x_at--660--1731Chr02:35048040..35048064 (25 bp)
ACCATCTCGTCTTCGCGGTCGCGGT
LOC_Os02g57210
OsAffx.12678.1.S1_x_at--285--1451Chr02:35048113..35048137 (25 bp)
AGAAGCCGTGCCTGCTGATGGAGCT
LOC_Os02g57210
OsAffx.12678.1.S1_x_at--818--611Chr02:35048199..35048223 (25 bp)
ATGCTGGAGGACAAGTACTGGGCGA
LOC_Os02g57210
OsAffx.12678.1.S1_x_at--872--8531Chr02:35048284..35048308 (25 bp)
TGGACCTCGACTCGCTCATCAAGGA
LOC_Os02g57210
OsAffx.12678.1.S1_x_at--1133--5711Chr02:35048292..35048316 (25 bp)
GACTCGCTCATCAAGGACGCGGAGA
LOC_Os02g57210
OsAffx.12678.1.S1_x_at--375--8011Chr02:35048378..35048402 (25 bp)
GGAGGAGTACATGGACCTCGTCCGC
LOC_Os02g57210
Target Sequence 
CGATCCGATCGAGGCGGGTTCATCACGATCGAGAACTCGGTGGCGGAGATGGAGGGCGGCGGCGCGTTCGGGCGCGTGGA
GGACGTGGACGAGGAGGGCGCGGGGTTCATCACGATGGAGAAGGGCACCATCTCGTCTTCGCGGTCGCGGTCTCGCCGGC
CGGCGGGCGAGGACGACGAGGCCGGCGACATGGAGGACGAGAAGCCGTGCCTGCTGATGGAGCTGGCGCCGGAGGAGGCG
GCGGCGGCGTTCGAGGTGGAGAAGGTGGAGGAGGAGTTCCTGGCGATGCTGGAGGACAAGTACTGGGCGAGGAGCAAGGA
GATCGAGAAGGGGTTGGGCGTGAGCCTGGACATGGGGCTCGATCTGGGGCTGGACCTCGACTCGCTCATCAAGGACGCGG
AGATGGAGCTCGCCAAGGCGGAGCAGGCGTGGCGGAGCAAGGTCGGCGCCGCCATCGTCGAGGAGGAGGAGTACATGGAC
CTCGTCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12678.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis