Browse Element(s) Details


Os.5861.1.S1_at

Description gb:AK103532.1
DB_XREF= gi:32988741
TID=Os.5861.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.5861 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033133D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033132A09, full insert sequence.
FL= gb:AK103591.1 gb:AK103532.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0644010/11hydrolase, TatD family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06355NANA7+3090114..3093055retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g06365NANA7+3093372..3099467retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g06380OsAffx.28306.1.S1_x_at11/117+3100011..3102541Peroxidase family protein
LOC_Os07g06380OsAffx.28306.1.S1_at11/117+3100011..3102541Peroxidase family protein
LOC_Os07g06390Os.52911.1.S1_at11/117+3103584..3107790expressed protein
LOC_Os07g06390Os.10342.1.S1_s_at1/117+3103584..3107790expressed protein
LOC_Os07g06400OsAffx.16122.1.S1_at11/117+3108246..3109085hypothetical protein
LOC_Os07g06410Os.49488.1.S1_at11/117+3109954..3112260expressed protein
LOC_Os07g06410OsAffx.29070.1.S1_at8/117+3109954..3112260expressed protein
LOC_Os07g06420NANA7+3113757..3113975expressed protein
LOC_Os07g06430OsAffx.5727.1.S1_at11/117+3114724..3115479hypothetical protein
LOC_Os07g06440OsAffx.29070.1.S1_s_at11/117+3117115..3120785hydrolase, TatD family protein, expressed
LOC_Os07g06440Os.5861.1.S1_at10/117+3117115..3120785hydrolase, TatD family protein, expressed
LOC_Os07g06440OsAffx.29070.2.S1_at5/117+3117115..3120785hydrolase, TatD family protein, expressed
LOC_Os07g06440OsAffx.29070.2.S1_x_at4/117+3117115..3120785hydrolase, TatD family protein, expressed
LOC_Os07g06440Os.49488.1.S1_at4/117+3117115..3120785hydrolase, TatD family protein, expressed
LOC_Os07g06450Os.12608.1.S1_at11/117+3120928..3122903RNA recognition motif family protein, expressed
LOC_Os07g06460OsAffx.5232.1.S1_s_at11/117+3123214..3124011expressed protein
LOC_Os07g06460OsAffx.5232.1.S1_at11/117+3123214..3124011expressed protein
LOC_Os07g06470OsAffx.5233.1.S1_at11/117+3126100..3128469CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os07g06480OsAffx.28307.1.S1_at11/117+3128829..3129099hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004536molecular_functiondeoxyribonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5861.1.S1_at--1142--272Chr07:3119635..3119657 (23 bp)
ATAGGTATTAATGGATGCTCTCTGA
LOC_Os07g06440
Os.5861.1.S1_at--957--7972Chr07:3119645..3119669 (25 bp)
GGATGCTCTCTGAAGACTAGTGAAA
LOC_Os07g06440
Os.5861.1.S1_at--1024--3191NONE
CAATGAGCCCTGCTTAGTCAGGCAA
NONE
Os.5861.1.S1_at--374--9071Chr07:3119843..3120330 (25 bp)
TGCTTAGTCAGGCAAGTTCTTGAGG
LOC_Os07g06440
Os.5861.1.S1_at--1138--9692Chr08:3835990..3836014 (25 bp)
TCAAAATAGCTGATGGGACATGACA
NONE
Os.5861.1.S1_at--256--8132Chr08:3836005..3836310 (25 bp)
GGACATGACAGAGCGTTTGTTACTT
NONE
Os.5861.1.S1_at--824--1371Chr07:3120658..3120682 (25 bp)
AGAGCGTTTGTTACTTTGATATTCA
LOC_Os07g06440
Os.5861.1.S1_at--1067--3311Chr07:3120681..3120705 (25 bp)
CACTTAACGATGTTTGCTACCTTTT
LOC_Os07g06440
Os.5861.1.S1_at--958--10391Chr07:3120713..3120737 (25 bp)
TTTTGCTTGGTTAAAGATCTTGTAC
LOC_Os07g06440
Os.5861.1.S1_at--648--6431Chr07:3120728..3120752 (25 bp)
GATCTTGTACTTCGACAATTGCCAA
LOC_Os07g06440
Os.5861.1.S1_at--323--10871Chr07:3120754..3120778 (25 bp)
TTGGCTTGCTATGAGAGTGTCGTTC
LOC_Os07g06440
Target Sequence 
ATAGGTATTAATGGATGCTCTCTGAAGACTAGTGAAAATCTTGAGGTTCTACAAGGTATTCCTGCAGAGAGGATGATGAT
AGAGACAGACTCTCCATACTGTGATATTAAAAATACTCATGCTGGAATCAAGTTCGTGAAGTCTGTCTGGCCATCCAAGA
AGAAAGAAAAGTACGAGCCGGATTCTACAGTAAAAGGTCGCAATGAGCCCTGCTTAGTCAGGCAAGTTCTTGAGGTTGTA
GCTGGATGCAAAGGAATTGCTGACATTGAAGGCTTAAGTAAAACTCTGTACCACAACACGTGCAGGCTCTTCTTCCCTCA
GGACCTGGATGCTTCTGCTGATGCACAGCTTGAGAGTGGTGCGTTTATTCAAAATAGCTGATGGGACATGACAGAGCGTT
TGTTACTTTGATATTCACTTAACGATGTTTGCTACCTTTTTTTTTTTTTTTTGCTTGGTTAAAGATCTTGTACTTCGACA
ATTGCCAAATTGGCTTGCTATGAGAGTGTCGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5861.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis