Browse Element(s) Details


Os.12608.1.S1_at

Description gb:AK067376.1
DB_XREF= gi:32977394
TID=Os.12608.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.12608 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-039-B02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013106F16, full insert sequence.
FL= gb:AK067376.1 gb:AK104773.1 gb:AK099188.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0645011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06365NANA7+3093372..3099467retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g06380OsAffx.28306.1.S1_x_at11/117+3100011..3102541Peroxidase family protein
LOC_Os07g06380OsAffx.28306.1.S1_at11/117+3100011..3102541Peroxidase family protein
LOC_Os07g06390Os.52911.1.S1_at11/117+3103584..3107790expressed protein
LOC_Os07g06390Os.10342.1.S1_s_at1/117+3103584..3107790expressed protein
LOC_Os07g06400OsAffx.16122.1.S1_at11/117+3108246..3109085hypothetical protein
LOC_Os07g06410Os.49488.1.S1_at11/117+3109954..3112260expressed protein
LOC_Os07g06410OsAffx.29070.1.S1_at8/117+3109954..3112260expressed protein
LOC_Os07g06420NANA7+3113757..3113975expressed protein
LOC_Os07g06430OsAffx.5727.1.S1_at11/117+3114724..3115479hypothetical protein
LOC_Os07g06440OsAffx.29070.1.S1_s_at11/117+3117115..3120785hydrolase, TatD family protein, expressed
LOC_Os07g06440Os.5861.1.S1_at10/117+3117115..3120785hydrolase, TatD family protein, expressed
LOC_Os07g06440OsAffx.29070.2.S1_at5/117+3117115..3120785hydrolase, TatD family protein, expressed
LOC_Os07g06440OsAffx.29070.2.S1_x_at4/117+3117115..3120785hydrolase, TatD family protein, expressed
LOC_Os07g06440Os.49488.1.S1_at4/117+3117115..3120785hydrolase, TatD family protein, expressed
LOC_Os07g06450Os.12608.1.S1_at11/117+3120928..3122903RNA recognition motif family protein, expressed
LOC_Os07g06460OsAffx.5232.1.S1_s_at11/117+3123214..3124011expressed protein
LOC_Os07g06460OsAffx.5232.1.S1_at11/117+3123214..3124011expressed protein
LOC_Os07g06470OsAffx.5233.1.S1_at11/117+3126100..3128469CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os07g06480OsAffx.28307.1.S1_at11/117+3128829..3129099hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006396biological_processRNA processing
GO:0009507cellular_componentchloroplast
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12608.1.S1_at--95--7871Chr07:3121820..3121844 (25 bp)
GGTTTCGGATTCGTCTCCTTCAGGA
LOC_Os07g06450
Os.12608.1.S1_at--601--2931Chr07:3121391..3121415 (25 bp)
AAGGAAGGCCACTGAGGCTCAGTAT
LOC_Os07g06450
Os.12608.1.S1_at--911--8351Chr07:3121366..3121390 (25 bp)
GGCGGAACAGAACCCAACAGCTGGT
LOC_Os07g06450
Os.12608.1.S1_at--170--2491Chr07:3121351..3121375 (25 bp)
AACAGCTGGTTCTCCTAGCACAGTG
LOC_Os07g06450
Os.12608.1.S1_at--917--5931Chr07:3121278..3121302 (25 bp)
GAGCAGAGCATTACCTCAGAACCTT
LOC_Os07g06450
Os.12608.1.S1_at--381--5652Chr08:3836575..3836599 (25 bp)
GACAGCTGCCAGTTATTAGTATCTA
NONE
Os.12608.1.S1_at--297--3171Chr07:3121198..3121222 (25 bp)
AATTGATGGTTGCACTGATTTACTT
LOC_Os07g06450
Os.12608.1.S1_at--19--8832Chr08:3836512..3836533 (22 bp)
TGATTTACTTATTCTGCCATTCGGC
NONE
Os.12608.1.S1_at--734--9191Chr07:3121169..3121193 (25 bp)
TGCCATTCGGCATTCCAATCTAAAT
LOC_Os07g06450
Os.12608.1.S1_at--715--1032Chr08:3836393..3836417 (25 bp)
AGGTGCTCCGAGTTTCAGTTATTGC
NONE
Os.12608.1.S1_at--60--1132Chr08:3836343..3836367 (25 bp)
AGTGCAACTGTTTTGCTTCCTATAT
NONE
Target Sequence 
GGTTTCGGATTCGTCTCCTTCAGGACTGCAGAGGATGCACAGGCTGCATTGGAGGCATTGGATGGAGTGGAACTGGAAGG
AAGGCCACTGAGGCTCAGTATGGCGGAACAGAACCCAACAGCTGGTTCTCCTAGCACAGTGCAGTCACAGGAGGAAGAAA
CTGCTTCAGAATCATCTGATGCAGAGACAGAGCAGAGCATTACCTCAGAACCTTCTGAAGCTGAAACGGAAGAGAGCAAC
TTGCAGACAGCTGCCAGTTATTAGTATCTAATTGATGGTTGCACTGATTTACTTATTCTGCCATTCGGCATTCCAATCTA
AATTGTACTTGNCCAANNNNAAAATTTTGACACAAGAGATGCTAAAATGGGATATGAGCCATAGCCAATAGAATATTATT
AGACATAGAGGTGCTCCGAGTTTCAGTTATTGCTGTAATATATTGTGCAGAAATCTAAAGTGCAACTGTTTTGCTTCCTA
TAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12608.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis