Browse Element(s) Details


OsAffx.5233.1.S1_at

Description tigr:9635.m00586
TID=OsAffx.5233.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=CCAAT-binding transcription factor (CBF-BNF-YA) subunit B, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0647011/11CCAAT-binding transcription factor subunit B family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06380OsAffx.28306.1.S1_x_at11/117+3100011..3102541Peroxidase family protein
LOC_Os07g06380OsAffx.28306.1.S1_at11/117+3100011..3102541Peroxidase family protein
LOC_Os07g06390Os.52911.1.S1_at11/117+3103584..3107790expressed protein
LOC_Os07g06390Os.10342.1.S1_s_at1/117+3103584..3107790expressed protein
LOC_Os07g06400OsAffx.16122.1.S1_at11/117+3108246..3109085hypothetical protein
LOC_Os07g06410Os.49488.1.S1_at11/117+3109954..3112260expressed protein
LOC_Os07g06410OsAffx.29070.1.S1_at8/117+3109954..3112260expressed protein
LOC_Os07g06420NANA7+3113757..3113975expressed protein
LOC_Os07g06430OsAffx.5727.1.S1_at11/117+3114724..3115479hypothetical protein
LOC_Os07g06440OsAffx.29070.1.S1_s_at11/117+3117115..3120785hydrolase, TatD family protein, expressed
LOC_Os07g06440Os.5861.1.S1_at10/117+3117115..3120785hydrolase, TatD family protein, expressed
LOC_Os07g06440OsAffx.29070.2.S1_at5/117+3117115..3120785hydrolase, TatD family protein, expressed
LOC_Os07g06440OsAffx.29070.2.S1_x_at4/117+3117115..3120785hydrolase, TatD family protein, expressed
LOC_Os07g06440Os.49488.1.S1_at4/117+3117115..3120785hydrolase, TatD family protein, expressed
LOC_Os07g06450Os.12608.1.S1_at11/117+3120928..3122903RNA recognition motif family protein, expressed
LOC_Os07g06460OsAffx.5232.1.S1_s_at11/117+3123214..3124011expressed protein
LOC_Os07g06460OsAffx.5232.1.S1_at11/117+3123214..3124011expressed protein
LOC_Os07g06470OsAffx.5233.1.S1_at11/117+3126100..3128469CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os07g06480OsAffx.28307.1.S1_at11/117+3128829..3129099hypothetical protein
LOC_Os07g06490Os.54677.1.S1_at11/117+3148558..3150943expressed protein
LOC_Os07g06500Os.18422.1.A1_at11/117+3151881..3155409F-box domain containing protein, expressed
LOC_Os07g06500Os.20860.1.S1_at1/117+3151881..3155409F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0016602cellular_componentCCAAT-binding factor complex
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5233.1.S1_at--221--1911Chr07:3126814..3126838 (25 bp)
ACGTGGGTCCGATCTACGTCAACGC
LOC_Os07g06470
OsAffx.5233.1.S1_at--836--7371Chr07:3126812..3126836 (25 bp)
GTGGGTCCGATCTACGTCAACGCGA
LOC_Os07g06470
OsAffx.5233.1.S1_at--62--8631Chr07:3126811..3126835 (25 bp)
TGGGTCCGATCTACGTCAACGCGAA
LOC_Os07g06470
OsAffx.5233.1.S1_at--895--9711Chr07:3126796..3126820 (25 bp)
TCAACGCGAAGCAGTTCAACGGCAT
LOC_Os07g06470
OsAffx.5233.1.S1_at--612--1831Chr07:3126793..3126817 (25 bp)
ACGCGAAGCAGTTCAACGGCATCAT
LOC_Os07g06470
OsAffx.5233.1.S1_at--654--4591Chr07:3126791..3126815 (25 bp)
GCGAAGCAGTTCAACGGCATCATCC
LOC_Os07g06470
OsAffx.5233.1.S1_at--499--5391Chr07:3126789..3126813 (25 bp)
GAAGCAGTTCAACGGCATCATCCGG
LOC_Os07g06470
OsAffx.5233.1.S1_at--1011--1671Chr07:3126578..3126740 (25 bp)
AGCCGGAAGCCGTACCTCCACGAGT
LOC_Os07g06470
OsAffx.5233.1.S1_at--890--4611Chr07:3126422..3126446 (25 bp)
GCGAGCAACAAGAGCTCGTCGGCGT
LOC_Os07g06470
OsAffx.5233.1.S1_at--20--1951Chr07:3126340..3126364 (25 bp)
ACGGCGGCGACTTCCACCACGCGAT
LOC_Os07g06470
OsAffx.5233.1.S1_at--751--5831Chr07:3126200..3126224 (25 bp)
GACCTCCTCAAGGTGTGACCGCCGC
LOC_Os07g06470
Target Sequence 
ACGTGGGTCCGATCTACGTCAACGCGAAGCAGTTCAACGGCATCATCCGGCGGCGGCTGGCGCGCGCCAAGGCGGAGCGG
GAGCACCGGGTTTCCCGGAGCCGGAAGCCGTACCTCCACGAGTCGCGCCACCGCCACGCCATGCGCCGCGCGCGGGGCAG
CGGCGGCCGCTTCCTCAACACCAAGAACGCCTCCTCCGCCGCCGCCGCGGCCGCCGACGCGGCGCCGGTGAGCTCCGGTG
GCGGCGACCACGGGGCGAGCAACAAGAGCTCGTCGGCGTCGGAGGCGACGCGCGTGTACGACGACGACGACGACATGGGC
GCGGGCGGCGGCGGCGACGGCGGCGACTTCCACCACGCGATGGGTCACCTCCGCTCGCCGGCGTTCTTCCCGTCGCTGGC
CGCGATGATGGACGGCGGCGGCGGCGGCGGCGAGGGGAAGTGGGCGACCGCGACGCCTCACCATGGCTGCCGCGTCGACC
TCCTCAAGGTGTGACCGCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5233.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis