Browse Element(s) Details


OsAffx.10584.1.S1_at

Description tigr:9629.m00300
TID=OsAffx.10584.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g038507/11hypothetical protein
LOC_Os08g067701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03830Os.28346.3.S1_x_at11/111+1605786..1614707retrotransposon protein, putative, unclassified
LOC_Os01g03830OsAffx.17950.1.S1_at7/111+1605786..1614707retrotransposon protein, putative, unclassified
LOC_Os01g03830Os.28346.1.S1_x_at4/111+1605786..1614707retrotransposon protein, putative, unclassified
LOC_Os01g03830Os.28346.5.S1_x_at1/111+1605786..1614707retrotransposon protein, putative, unclassified
LOC_Os01g03840Os.38390.1.S1_at3/111+1621961..1623376expressed protein
LOC_Os01g03850OsAffx.10584.1.S1_at7/111+1628808..1629835hypothetical protein
LOC_Os01g03850Os.52655.1.S1_at1/111+1628808..1629835hypothetical protein
LOC_Os01g03860NANA1+1634909..1635838hypothetical protein
LOC_Os01g03870Os.20597.1.S1_at11/111+1638036..1640953expressed protein
LOC_Os01g03880Os.47130.4.A1_x_at3/111+1643960..1644217retrotransposon protein, putative, unclassified
LOC_Os01g03890OsAffx.22801.1.S1_at11/111+1654178..1655190seed specific protein Bn15D17A, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10584.1.S1_at--718--8392Chr09:7630523..7630885 (25 bp)
GGCCCGGCACGGTCCGAGTAGTATT
NONE
OsAffx.10584.1.S1_at--761--11922Chr11:16244803..16244838 (25 bp)
AGTATTGGGCCGTGTATGCCGCCCG
NONE
OsAffx.10584.1.S1_at--1093--3891NONE
CTGGCACGGCATGGCTCGAGTCGAC
NONE
OsAffx.10584.1.S1_at--714--5771Chr01:1629831..1629855 (25 bp)
GACGAGACTCGACAAGGACAATGGC
NONE
OsAffx.10584.1.S1_at--898--471Chr01:1629788..1629812 (25 bp)
ATCGGTAGCAGCACCGGAGTCAATT
LOC_Os01g03850
OsAffx.10584.1.S1_at--1112--8951Chr01:1629738..1629762 (25 bp)
TGACACCACTGCATGATCGATCTAG
LOC_Os01g03850
OsAffx.10584.1.S1_at--405--931Chr01:1629087..1629111 (25 bp)
AGGCATATGGCCATGTCCTGCAAGT
LOC_Os01g03850
OsAffx.10584.1.S1_at--109--9271Chr01:1629072..1629096 (25 bp)
TCCTGCAAGTGCGATCCTGAAGATT
LOC_Os01g03850
OsAffx.10584.1.S1_at--980--8991Chr01:1629055..1629079 (25 bp)
TGAAGATTTATTTCCATGCCCTTGG
LOC_Os01g03850
OsAffx.10584.1.S1_at--241--611Chr01:1629040..1629064 (25 bp)
ATGCCCTTGGATTGTTCCTCTTGTT
LOC_Os01g03850
OsAffx.10584.1.S1_at--990--9251Chr01:1629025..1629049 (25 bp)
TCCTCTTGTTAATTTGTGTGCCAAA
LOC_Os01g03850
Target Sequence 
GGCCCGGCACGGTCCGAGTAGTATTGGGCCGTGTATGCCGCCCGTGGGCTGGCACGGCATGGCTCGAGTCGACGAGACTC
GACAAGGACAATGGCGATGTGGAAGAGCAAGAAATCGGTAGCAGCACCGGAGTCAATTGGTGTTGGAACATCAATCGAAG
CAATGACACCACTGCATGATCGATCTAGAGGCATATGGCCATGTCCTGCAAGTGCGATCCTGAAGATTTATTTCCATGCC
CTTGGATTGTTCCTCTTGTTAATTTGTGTGCCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10584.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis