Browse Element(s) Details


Os.52655.1.S1_at

Description gb:AK068568.1
DB_XREF= gi:32978585
TID=Os.52655.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52655 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023046M01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013152N14, full insert sequence.
FL= gb:AK068568.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1302011/11expressed protein
LOC_Os01g038501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12980NANA2+6877381..6882468retrotransposon protein, putative, unclassified
LOC_Os02g12990NANA2+6886165..6887598retrotransposon protein, putative, unclassified
LOC_Os02g13000Os.23706.1.A1_x_at1/112+6891525..6893620retrotransposon protein, putative, unclassified
LOC_Os02g13010NANA2+6894242..6897521retrotransposon protein, putative, unclassified
LOC_Os02g13020Os.52655.1.S1_x_at11/112+6902424..6903970expressed protein
LOC_Os02g13020Os.52655.1.S1_at11/112+6902424..6903970expressed protein
LOC_Os02g13020OsAffx.19426.1.S1_x_at1/112+6902424..6903970expressed protein
LOC_Os02g13030OsAffx.12013.1.S1_at11/112+6905218..6905667hypothetical protein
LOC_Os02g13040OsAffx.2589.1.S1_at11/112+6906296..6907364hypothetical protein
LOC_Os02g13050NANA2+6909190..6909835hypothetical protein
LOC_Os02g13060Os.27857.1.S1_at11/112+6915424..6916662expressed protein
LOC_Os02g13070OsAffx.24221.1.S1_at11/112+6917971..6918449hypothetical protein
LOC_Os02g13080OsAffx.12014.1.S1_at11/112+6920986..6921457hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52655.1.S1_at--52--1072Chr08:22325915..22325939 (25 bp)
AGGGTGCTGACATGGTCTCCATGAC
NONE
Os.52655.1.S1_at--1065--9111Chr02:6903542..6903566 (25 bp)
TGCTGACATGGTCTCCATGACCTGT
LOC_Os02g13020
Os.52655.1.S1_at--198--4671Chr02:6903734..6903758 (25 bp)
GCGTGTACTTTTCCCATAGCACAAT
LOC_Os02g13020
Os.52655.1.S1_at--634--7011Chr02:6903738..6903762 (25 bp)
GTACTTTTCCCATAGCACAATGGTA
LOC_Os02g13020
Os.52655.1.S1_at--606--10391Chr02:6903742..6903766 (25 bp)
TTTTCCCATAGCACAATGGTAGCAA
LOC_Os02g13020
Os.52655.1.S1_at--632--1491Chr02:6903751..6903775 (25 bp)
AGCACAATGGTAGCAAGCTGCAGCT
LOC_Os02g13020
Os.52655.1.S1_at--1017--6951Chr02:6903760..6903784 (25 bp)
GTAGCAAGCTGCAGCTATAGCCCCA
LOC_Os02g13020
Os.52655.1.S1_at--84--5172Chr02:6903763..6903787 (25 bp)
GCAAGCTGCAGCTATAGCCCCATGG
LOC_Os02g13020
Os.52655.1.S1_at--280--2691Chr02:6903765..6903789 (25 bp)
AAGCTGCAGCTATAGCCCCATGGGC
LOC_Os02g13020
Os.52655.1.S1_at--967--1531Chr02:6903772..6903796 (25 bp)
AGCTATAGCCCCATGGGCCAGGGTT
LOC_Os02g13020
Os.52655.1.S1_at--430--1671Chr02:6903778..6903802 (25 bp)
AGCCCCATGGGCCAGGGTTCGAATC
LOC_Os02g13020
Target Sequence 
AGGGTGCTGACATGGTCTCCATGACCTGTGGGGCCCACGTGGGTCCCACGCTGAGTCAGCCGCCACGTGGGACAAAACCG
GGGTCAAAACCGCCGAGGGACCTTCTGTGACCGGTTTTGTAAGTTGGGGGACGCTGGATGTCCGGTTTTGCGGTTCGGGG
ACGATTTTGTATCTCGCTGACAAGTTGAGGGACCTTGCGTGTACTTTTCCCATAGCACAATGGTAGCAAGCTGCAGCTAT
AGCCCCATGGGCCAGGGTTCGAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52655.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis