Browse Element(s) Details


Os.27857.1.S1_at

Description gb:CB656921
DB_XREF= gi:29660646
DB_XREF=OSJNEc11M23.r
CLONE=OSJNEc11M23
TID=Os.27857.1
CNT=28
FEA=EST
TIER=Stack
STK=9
UG=Os.27857 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_173107.1 (A.thaliana) arginineserine-rich protein, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1306011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13000Os.23706.1.A1_x_at1/112+6891525..6893620retrotransposon protein, putative, unclassified
LOC_Os02g13010NANA2+6894242..6897521retrotransposon protein, putative, unclassified
LOC_Os02g13020Os.52655.1.S1_x_at11/112+6902424..6903970expressed protein
LOC_Os02g13020Os.52655.1.S1_at11/112+6902424..6903970expressed protein
LOC_Os02g13020OsAffx.19426.1.S1_x_at1/112+6902424..6903970expressed protein
LOC_Os02g13030OsAffx.12013.1.S1_at11/112+6905218..6905667hypothetical protein
LOC_Os02g13040OsAffx.2589.1.S1_at11/112+6906296..6907364hypothetical protein
LOC_Os02g13050NANA2+6909190..6909835hypothetical protein
LOC_Os02g13060Os.27857.1.S1_at11/112+6915424..6916662expressed protein
LOC_Os02g13070OsAffx.24221.1.S1_at11/112+6917971..6918449hypothetical protein
LOC_Os02g13080OsAffx.12014.1.S1_at11/112+6920986..6921457hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27857.1.S1_at--793--1931Chr02:6916147..6916171 (25 bp)
ACGGCAAGTGGTGATCTCTCCCTCT
LOC_Os02g13060
Os.27857.1.S1_at--116--7211Chr02:6916235..6916259 (25 bp)
GTCGTCATCTTTCTTGCTCTTGGGT
LOC_Os02g13060
Os.27857.1.S1_at--579--10711Chr02:6916248..6916272 (25 bp)
TTGCTCTTGGGTGTGTTTGAGTCAC
LOC_Os02g13060
Os.27857.1.S1_at--607--10771Chr02:6916264..6916288 (25 bp)
TTGAGTCACCGTTGATTGCTACCTT
LOC_Os02g13060
Os.27857.1.S1_at--752--1971Chr02:6916301..6916325 (25 bp)
ACTGCACACCTTCATTCGATTTGTT
LOC_Os02g13060
Os.27857.1.S1_at--645--9391Chr02:6916316..6916340 (25 bp)
TCGATTTGTTACTCCTTCTTGTTTT
LOC_Os02g13060
Os.27857.1.S1_at--122--6531Chr02:6916373..6916397 (25 bp)
GATTTGGTCTGCATATAGCTACTGC
LOC_Os02g13060
Os.27857.1.S1_at--533--9911Chr02:6916392..6916416 (25 bp)
TACTGCAGCCATGTAGTTACTACTA
LOC_Os02g13060
Os.27857.1.S1_at--856--10691Chr02:6916468..6916492 (25 bp)
TTGCCTTGGTGTTTTGCTGCAGAGC
LOC_Os02g13060
Os.27857.1.S1_at--537--7731Chr02:6916524..6916548 (25 bp)
GGTGTGCTTGTTGTTGTACATACTT
LOC_Os02g13060
Os.27857.1.S1_at--40--10151Chr02:6916564..6916588 (25 bp)
TATCTCTGTACCCAGTTTACTGTAG
LOC_Os02g13060
Target Sequence 
ACGGCAAGTGGTGATCTCTCCCTCTCACCCTCTCTCTCGCCATCGCCATCGCCATGGCTCGAGCTCGAGCTCGAGCTAGC
TCCTCTTCGTCGTCATCTTTCTTGCTCTTGGGTGTGTTTGAGTCACCGTTGATTGCTACCTTCCTCCTACCTGCACTGCA
CACCTTCATTCGATTTGTTACTCCTTCTTGTTTTCTTCTTGGATATTAGGATTTTAATTTTGACGAGATTTGGTCTGCAT
ATAGCTACTGCAGCCATGTAGTTACTACTACTACTTAGTATAATTCAGTATGAGGAGATACATATGAGCAGTGGTAAGCT
TTTGCCTTGGTGTTTTGCTGCAGAGCAAAAAATCCAAGGAAAAGTTGATCAGTGTGTGGTGTGCTTGTTGTTGTACATAC
TTGTATGAGTATTATTATATCTCTGTACCCAGTTTACTGTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27857.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis