Browse Element(s) Details


OsAffx.19426.1.S1_x_at

Description tigr:9635.m04670
TID=OsAffx.19426.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4647011/11hypothetical protein
LOC_Os11g476402/11expressed protein
LOC_Os02g130201/11expressed protein
LOC_Os02g150501/11hypothetical protein
LOC_Os02g124601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46450Os.32521.3.S1_x_at11/117+27711627..27720965pleckstrin homology domain-containing protein, putative, expressed
LOC_Os07g46450Os.32521.1.S1_at11/117+27711627..27720965pleckstrin homology domain-containing protein, putative, expressed
LOC_Os07g46450Os.32521.2.S1_at10/117+27711627..27720965pleckstrin homology domain-containing protein, putative, expressed
LOC_Os07g46460Os.7907.2.S1_x_at11/117+27721322..27736505Ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os07g46460Os.7907.1.S2_at11/117+27721322..27736505Ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os07g46460Os.7907.1.S2_a_at11/117+27721322..27736505Ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os07g46460Os.7907.1.S1_a_at11/117+27721322..27736505Ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os07g46470OsAffx.19426.1.S1_at11/117+27739788..27743199hypothetical protein
LOC_Os07g46470OsAffx.19426.1.S1_x_at11/117+27739788..27743199hypothetical protein
LOC_Os07g46470Os.52655.1.S1_x_at2/117+27739788..27743199hypothetical protein
LOC_Os07g46480Os.46987.1.S1_x_at11/117+27744614..27746004Eukaryotic aspartyl protease family protein, expressed
LOC_Os07g46480Os.6791.1.S1_x_at1/117+27744614..27746004Eukaryotic aspartyl protease family protein, expressed
LOC_Os07g46490Os.11460.1.S1_at11/117+27751108..27755611Phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19426.1.S1_x_at--288--6012Chr11:28213310..28213334 (25 bp)
GAGAGGATATCGACCGGCCGGCTCC
LOC_Os11g47640
OsAffx.19426.1.S1_x_at--165--4696Chr11:28213509..28213533 (25 bp)
GCGGAGGTCTCCTCTGATAGGCGAT
LOC_Os11g47640
OsAffx.19426.1.S1_x_at--98--1751Chr07:27742987..27743011 (25 bp)
ACCTTCACCGACATGCATGCATTGA
LOC_Os07g46470
OsAffx.19426.1.S1_x_at--618--4971Chr07:27743013..27743037 (25 bp)
GCATCATACATACTCTAACTTCAGA
LOC_Os07g46470
OsAffx.19426.1.S1_x_at--786--2051Chr07:27743030..27743054 (25 bp)
ACTTCAGAAGAGATGCGGAGCCGAG
LOC_Os07g46470
OsAffx.19426.1.S1_x_at--354--6331Chr07:27743041..27743065 (25 bp)
GATGCGGAGCCGAGATTCAATCAAA
LOC_Os07g46470
OsAffx.19426.1.S1_x_at--218--8091Chr07:27743046..27743070 (25 bp)
GGAGCCGAGATTCAATCAAACTACT
LOC_Os07g46470
OsAffx.19426.1.S1_x_at--857--371Chr07:27743060..27743084 (25 bp)
ATCAAACTACTTCAGCTTCACCAAA
LOC_Os07g46470
OsAffx.19426.1.S1_x_at--140--11Chr07:27743120..27743144 (25 bp)
AACGAACTACAGATAACCTACTTGG
LOC_Os07g46470
OsAffx.19426.1.S1_x_at--355--3431Chr07:27743129..27743153 (25 bp)
CAGATAACCTACTTGGAGGAGCTTC
LOC_Os07g46470
OsAffx.19426.1.S1_x_at--29--931Chr07:27743145..27743169 (25 bp)
AGGAGCTTCAAATCCTAAGAAACAC
LOC_Os07g46470
Target Sequence 
GAGAGGATATCGACCGGCCGGCTCCCCACCCGNCGAACGCGAGCGCGAGCGTGAGGTTCGTGCTGGGNGGTGACGCGGCG
GNGGAGACANGGGACAGCAAGCTCGGCGGCGGCAGGCGAGCGCGGCTGCGGATGGGGAGCGGNGGCGCCGACGACTCCGC
NCCGCTCGGCCTCATCGNNGTCGGCGGCTCCGGGCGCGGGCGGAGGTCTCCTCTGATAGGCGATNGNGGCCACGGTCACC
GNGCCACTGNNNNNNCNAATNNNNNCNTNNNCNNNTNNNNNNNNAANCNNNNNNCTNNNCCTTGCTGCGGCCTCACGGTC
CTTCACACCTTCACCGACATGCATGCATTGATGCATCATACATACTCTAACTTCAGAAGAGATGCGGAGCCGAGATTCAA
TCAAACTACTTCAGCTTCACCAAAAAGTGAAACAGAGTGGAATAAAGTGATACAAAATAAACGAACTACAGATAACCTAC
TTGGAGGAGCTTCAAATCCTAAGAAACAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19426.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis