Browse Element(s) Details


Os.11460.1.S1_at

Description gb:AK071875.1
DB_XREF= gi:32981898
TID=Os.11460.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11460 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) 1-phosphatidylinositol-4-phosphate kinase-like~contains ESTs AU030318(E50902),AU030317(E50902) (OJ1477_F01.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013038A02, full insert sequence.
FL= gb:AK071875.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4649011/11Phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46460Os.7907.2.S1_x_at11/117+27721322..27736505Ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os07g46460Os.7907.1.S2_at11/117+27721322..27736505Ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os07g46460Os.7907.1.S2_a_at11/117+27721322..27736505Ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os07g46460Os.7907.1.S1_a_at11/117+27721322..27736505Ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os07g46470OsAffx.19426.1.S1_at11/117+27739788..27743199hypothetical protein
LOC_Os07g46470OsAffx.19426.1.S1_x_at11/117+27739788..27743199hypothetical protein
LOC_Os07g46470Os.52655.1.S1_x_at2/117+27739788..27743199hypothetical protein
LOC_Os07g46480Os.46987.1.S1_x_at11/117+27744614..27746004Eukaryotic aspartyl protease family protein, expressed
LOC_Os07g46480Os.6791.1.S1_x_at1/117+27744614..27746004Eukaryotic aspartyl protease family protein, expressed
LOC_Os07g46490Os.11460.1.S1_at11/117+27751108..27755611Phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os07g46500Os.11488.1.S1_at11/117+27773143..27776265Tankyrase 2, putative, expressed
LOC_Os07g46500Os.44618.1.S1_s_at11/117+27773143..27776265Tankyrase 2, putative, expressed
LOC_Os07g46510Os.34873.1.S1_at11/117+27779362..27780298expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016308molecular_function1-phosphatidylinositol-4-phosphate 5-kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11460.1.S1_at--449--5931Chr07:27751661..27751685 (25 bp)
GAGCATGCATACAAATCTTTCCAGT
LOC_Os07g46490
Os.11460.1.S1_at--741--2231Chr07:27751649..27751673 (25 bp)
AAATCTTTCCAGTATGACCCAACCT
LOC_Os07g46490
Os.11460.1.S1_at--71--8911Chr07:27751635..27751659 (25 bp)
TGACCCAACCTCAATATCAGCGGTG
LOC_Os07g46490
Os.11460.1.S1_at--985--10151Chr07:27751621..27751645 (25 bp)
TATCAGCGGTGGACCCAAGGCAGTA
LOC_Os07g46490
Os.11460.1.S1_at--347--10751Chr07:27751528..27751552 (25 bp)
TTGAAGCTCAAGAAACCTCTGCCTC
LOC_Os07g46490
Os.11460.1.S1_at--936--1271Chr07:27751470..27751494 (25 bp)
AGATCAGGCTGTCACACCATGCAAA
LOC_Os07g46490
Os.11460.1.S1_at--227--5151Chr07:27751450..27751474 (25 bp)
GCAAAATGCAGTTGGGCACTCTACT
LOC_Os07g46490
Os.11460.1.S1_at--428--8251Chr07:27751436..27751460 (25 bp)
GGCACTCTACTTGTGTGCTGTCAAT
LOC_Os07g46490
Os.11460.1.S1_at--510--2071Chr07:27751428..27751452 (25 bp)
ACTTGTGTGCTGTCAATTGTATGTA
LOC_Os07g46490
Os.11460.1.S1_at--140--2451Chr07:27751401..27751425 (25 bp)
AAAATGGATGGCAGCTTCAGTGGAA
LOC_Os07g46490
Os.11460.1.S1_at--1043--332Chr07:27751295..27751319 (25 bp)
ATACACACATATATAGAGCTCACTA
LOC_Os07g46490
Target Sequence 
GAGCATGCATACAAATCTTTCCAGTATGACCCAACCTCAATATCAGCGGTGGACCCAAGGCAGTANTCTAGACGTTTTAA
AGATTTNATATACAAAGCATTTCAAGAAGACAGGCTAGATAGCTGAAAATGTGTTGAAGCTCAAGAAACCTCTGCCTCCA
GGTGTANATGAACTTTAAACTGTNCAAAGAAAGATCAGGCTGTCACACCATGCAAAATGCAGTTGGGCACTCTACTTGTG
TGCTGTCAATTGTATGTATGAAAATGGATGGCAGCTTCAGTGGAAGTGATCTTGGTGGTAGAGCTGCNTGAACTCATGGT
TTTCCAACAGAGGTNGTCTGGCTNTAGCGTAAATATAAATAGCTTTATACACACATATATAGAGCTCACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11460.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis