Browse Element(s) Details


Os.46987.1.S1_x_at

Description gb:CK738634
DB_XREF= gi:42592148
DB_XREF=BR050005000C01.ab1
CLONE=BR050005000C01.ab1
TID=Os.46987.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46987 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) similar to nucleoid DNA-binding-like protein (P0047B07.36), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4648011/11Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g725101/11Eukaryotic aspartyl protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46450Os.32521.3.S1_x_at11/117+27711627..27720965pleckstrin homology domain-containing protein, putative, expressed
LOC_Os07g46450Os.32521.1.S1_at11/117+27711627..27720965pleckstrin homology domain-containing protein, putative, expressed
LOC_Os07g46450Os.32521.2.S1_at10/117+27711627..27720965pleckstrin homology domain-containing protein, putative, expressed
LOC_Os07g46460Os.7907.2.S1_x_at11/117+27721322..27736505Ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os07g46460Os.7907.1.S2_at11/117+27721322..27736505Ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os07g46460Os.7907.1.S2_a_at11/117+27721322..27736505Ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os07g46460Os.7907.1.S1_a_at11/117+27721322..27736505Ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os07g46470OsAffx.19426.1.S1_at11/117+27739788..27743199hypothetical protein
LOC_Os07g46470OsAffx.19426.1.S1_x_at11/117+27739788..27743199hypothetical protein
LOC_Os07g46470Os.52655.1.S1_x_at2/117+27739788..27743199hypothetical protein
LOC_Os07g46480Os.46987.1.S1_x_at11/117+27744614..27746004Eukaryotic aspartyl protease family protein, expressed
LOC_Os07g46480Os.6791.1.S1_x_at1/117+27744614..27746004Eukaryotic aspartyl protease family protein, expressed
LOC_Os07g46490Os.11460.1.S1_at11/117+27751108..27755611Phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46987.1.S1_x_at--214--10511Chr07:27745423..27745447 (25 bp)
TTCAAGTCGCTCAACTTCTCCGGCA
LOC_Os07g46480
Os.46987.1.S1_x_at--788--1651Chr07:27745472..27745496 (25 bp)
AGCCGCGGCGGATCAAGACGACGCC
LOC_Os07g46480
Os.46987.1.S1_x_at--1118--9392Chr07:27745519..27745543 (25 bp)
TCGTCGCTCTACTACGTCAACATGA
LOC_Os07g46480
Os.46987.1.S1_x_at--322--5491Chr07:27745560..27745584 (25 bp)
GAAAAAGGTGGTGTCGATCCCGGCG
LOC_Os07g46480
Os.46987.1.S1_x_at--650--7631Chr07:27745636..27745660 (25 bp)
GGGACGATGTTCACGCGCCTGGTGG
LOC_Os07g46480
Os.46987.1.S1_x_at--343--8751Chr07:27745667..27745691 (25 bp)
TGTACCTGGCGCTCCGCGACGAGGT
LOC_Os07g46480
Os.46987.1.S1_x_at--1086--3771Chr07:27745732..27745756 (25 bp)
CTCGGCGGGTTCGACACGTGCTACA
LOC_Os07g46480
Os.46987.1.S1_x_at--329--9371Chr07:27745793..27745817 (25 bp)
TCGACGGCATGCAGGTGACGCTGCC
LOC_Os07g46480
Os.46987.1.S1_x_at--540--4251Chr07:27745816..27745840 (25 bp)
CCGGAGGAGAACGTGGTGATCCACA
LOC_Os07g46480
Os.46987.1.S1_x_at--526--8611Chr07:27745829..27745853 (25 bp)
TGGTGATCCACACCACGTACGGCAC
LOC_Os07g46480
Os.46987.1.S1_x_at--450--4231Chr07:27745883..27745907 (25 bp)
CCGACGGCGTCAACACGGTGCTCAA
LOC_Os07g46480
Target Sequence 
TTCAAGTCGCTCAACTTCTCCGGCACGCTCCGGCTCGGCCGGAACGGGCAGCCGCGGCGGATCAAGACGACGCCGCTGCT
CGCCAACCCGCACCGCTCGTCGCTCTACTACGTCAACATGACCGGCATCCGCGTGGGGAAAAAGGTGGTGTCGATCCCGG
CGTCCGCGCTGGCGTTCGACCCGGCGACGGGCGCCGGCACGGTGCTCGACTCGGGGACGATGTTCACGCGCCTGGTGGCG
CCGGTGTACCTGGCGCTCCGCGACGAGGTCCGCCGCCGCGTCGGCGCCGGCGCCGCCGCCGTGTCCTCCCTCGGCGGGTT
CGACACGTGCTACAACACCACGGTGGCGTGGCCGCCGGTGACGCTGCTGTTCGACGGCATGCAGGTGACGCTGCCGGAGG
AGAACGTGGTGATCCACACCACGTACGGCACCACCAGCTGCCTGGCCATGGCGGCGGCGCCCGACGGCGTCAACACGGTG
CTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46987.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis