Browse Element(s) Details


Os.44618.1.S1_s_at

Description gb:AU095010
DB_XREF= gi:8857692
DB_XREF=AU095010
CLONE=E50147
TID=Os.44618.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.44618 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST AU095010(E50147)~unknown protein (OJ1477_F01.18), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4650011/11Tankyrase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46490Os.11460.1.S1_at11/117+27751108..27755611Phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os07g46500Os.11488.1.S1_at11/117+27773143..27776265Tankyrase 2, putative, expressed
LOC_Os07g46500Os.44618.1.S1_s_at11/117+27773143..27776265Tankyrase 2, putative, expressed
LOC_Os07g46510Os.34873.1.S1_at11/117+27779362..27780298expressed protein
LOC_Os07g46520OsAffx.28932.1.S1_at11/117+27781970..27785226HAD-superfamily hydrolase, subfamily IA, variant 1 containing protein, expressed
LOC_Os07g46520Os.45924.1.S1_at11/117+27781970..27785226HAD-superfamily hydrolase, subfamily IA, variant 1 containing protein, expressed
LOC_Os07g46520Os.45924.1.S1_x_at11/117+27781970..27785226HAD-superfamily hydrolase, subfamily IA, variant 1 containing protein, expressed
LOC_Os07g46530OsAffx.16734.1.S1_at11/117+27788969..27789283hypothetical protein
LOC_Os07g46540Os.9234.1.S1_at10/117+27789427..27797803HEAT repeat family protein, expressed
LOC_Os07g46540Os.47368.1.S1_x_at10/117+27789427..27797803HEAT repeat family protein, expressed
LOC_Os07g46550OsAffx.16735.1.S1_at11/117+27798862..27800717Annexin family protein

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Gene Ontology Classification
GO idTypeName
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.44618.1.S1_s_at--792--9011Chr07:27774767..27774791 (25 bp)
TGCAATCGGTGCAGCAGTAGCTCAA
LOC_Os07g46500
Os.44618.1.S1_s_at--334--9711Chr07:27774746..27774770 (25 bp)
TCAAGCAGAACTCGATGGTGTCACT
LOC_Os07g46500
Os.44618.1.S1_s_at--824--10451Chr07:27773426..27773450 (25 bp)
TTAGCAGACGAGGAGCTTCCAACAA
LOC_Os07g46500
Os.44618.1.S1_s_at--559--2951Chr07:27773387..27773411 (25 bp)
AATGGACCCAATCTCATGTCAGCTT
LOC_Os07g46500
Os.44618.1.S1_s_at--951--751Chr07:27773372..27773396 (25 bp)
ATGTCAGCTTCACGGTTAGCAGACG
LOC_Os07g46500
Os.44618.1.S1_s_at--344--3011Chr07:27773319..27773343 (25 bp)
AATGAACTCTGATCTTTTCGCCGTT
LOC_Os07g46500
Os.44618.1.S1_s_at--52--10651Chr07:27773303..27773327 (25 bp)
TTCGCCGTTCTTGCGCAGAAGATAT
LOC_Os07g46500
Os.44618.1.S1_s_at--526--3531Chr07:27773270..27773294 (25 bp)
CATGCTCAGCTCTTGTTTACTACAG
LOC_Os07g46500
Os.44618.1.S1_s_at--87--671Chr07:27773210..27773234 (25 bp)
ATGAATTCCGCGGATGGCTCGTGAA
LOC_Os07g46500
Os.44618.1.S1_s_at--853--851Chr07:27773197..27773221 (25 bp)
ATGGCTCGTGAATCGCGATGCCTTG
LOC_Os07g46500
Os.44618.1.S1_s_at--820--9191Chr07:27773179..27773203 (25 bp)
TGCCTTGTCACGCATACTGTTGTAT
LOC_Os07g46500
Target Sequence 
TGCAATCGGTGCAGCAGTAGCTCAAGCAGAACTCGATGGTGTCACTGTNTNCNNANNNNNNNNNCTTCATGGTTAGCAGA
CGAGGAGCTTCCAACAAAAGAAGAATATATCAATGGACCCAATCTCATGTCAGCTTCACGGTTAGCAGACGAGGAGCTTC
TAAAAAAGAAGAATACATCAATGAACTCTGATCTTTTCGCCGTTCTTGCGCAGAAGATATACATGAGGCATGCTCAGCTC
TTGTTTACTACAGTACATGAGACTATGTAGTTTAGCCTTATGATCGAAATGAATTCCGCGGATGGCTCGTGAATCGCGAT
GCCTTGTCACGCATACTGTTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.44618.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis