Browse Element(s) Details


Os.45924.1.S1_x_at

Description gb:NM_186000.1
DB_XREF= gi:34899085
GEN=OJ1477_F01.22
TID=Os.45924.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45924 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs AU091627(C0596),D15410(C0596A)~similar to Arabidopsis thaliana chromosome 2, At2g41250~unknown protein (OJ1477_F01.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) contains ESTs AU091627(C0596),D15410(C0596A)~similar to Arabidopsis thaliana chromosome 2, At2g41250~unknown protein (OJ1477_F01.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4652011/11HAD-superfamily hydrolase, subfamily IA, variant 1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46500Os.11488.1.S1_at11/117+27773143..27776265Tankyrase 2, putative, expressed
LOC_Os07g46500Os.44618.1.S1_s_at11/117+27773143..27776265Tankyrase 2, putative, expressed
LOC_Os07g46510Os.34873.1.S1_at11/117+27779362..27780298expressed protein
LOC_Os07g46520OsAffx.28932.1.S1_at11/117+27781970..27785226HAD-superfamily hydrolase, subfamily IA, variant 1 containing protein, expressed
LOC_Os07g46520Os.45924.1.S1_at11/117+27781970..27785226HAD-superfamily hydrolase, subfamily IA, variant 1 containing protein, expressed
LOC_Os07g46520Os.45924.1.S1_x_at11/117+27781970..27785226HAD-superfamily hydrolase, subfamily IA, variant 1 containing protein, expressed
LOC_Os07g46530OsAffx.16734.1.S1_at11/117+27788969..27789283hypothetical protein
LOC_Os07g46540Os.9234.1.S1_at10/117+27789427..27797803HEAT repeat family protein, expressed
LOC_Os07g46540Os.47368.1.S1_x_at10/117+27789427..27797803HEAT repeat family protein, expressed
LOC_Os07g46550OsAffx.16735.1.S1_at11/117+27798862..27800717Annexin family protein
LOC_Os07g46560Os.31545.1.S1_at11/117+27806098..27809817Ubiquitin ligase SINAT5, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45924.1.S1_x_at--840--9871Chr07:27784172..27784196 (25 bp)
TACAGGAGGGCTTATGCGCAGCCAT
LOC_Os07g46520
Os.45924.1.S1_x_at--789--791Chr07:27782960..27782984 (25 bp)
ATGTGGATGATGGTAGGCCCTTCTG
LOC_Os07g46520
Os.45924.1.S1_x_at--627--8411Chr07:27782945..27782969 (25 bp)
GGCCCTTCTGGCAGCATATAGTTAG
LOC_Os07g46520
Os.45924.1.S1_x_at--787--7971Chr07:27782910..27782934 (25 bp)
GGATGCTCAGATTTACAGTACTTTG
LOC_Os07g46520
Os.45924.1.S1_x_at--896--5811Chr07:27782753..27782777 (25 bp)
GACCCTGACGCTAAATATGTTTTTG
LOC_Os07g46520
Os.45924.1.S1_x_at--379--8771Chr07:27782694..27782718 (25 bp)
TGTATCCAACTTTGACACACGTCTT
LOC_Os07g46520
Os.45924.1.S1_x_at--827--10471Chr07:27782660..27782684 (25 bp)
TTACAGGCCCTGAATTGTGATCACT
LOC_Os07g46520
Os.45924.1.S1_x_at--410--8771Chr07:27782518..27782643 (25 bp)
TGTATCTGCTGAGGTTGCTGCGGAA
LOC_Os07g46520
Os.45924.1.S1_x_at--21--7771Chr07:27782421..27782445 (25 bp)
GGTGATGACCGCAGGAATGATCTCT
LOC_Os07g46520
Os.45924.1.S1_x_at--383--10331Chr07:27782207..27782365 (25 bp)
TTTCAAGGAGAACCAAGCTCACATC
LOC_Os07g46520
Os.45924.1.S1_x_at--484--3051Chr07:27782178..27782202 (25 bp)
AATCTGGATTGCTATGCAGGTCGCA
LOC_Os07g46520
Target Sequence 
TACAGGAGGGCTTATGCGCAGCCATGGGGTAGATCGCGGCTGAGGTATGTGGATGATGGTAGGCCCTTCTGGCAGCATAT
AGTTAGCNCTTCNACTGGATGCTCAGATTTACAGTACTTTGAGGAACTTTATCAGTACTATACAACTGCAAAGGCTTGGC
AGCTCTGCGACCCTGACGCTAAATATGTTTTTGAAGCATTGAGAAAGGCTGGTGTAAAAACAGCTGTTGTATCCAACTTT
GACACACGTCTTNCGGCCACTTTTACAGGCCCTGAATTGTGATCACTGGTTTGATGCAGTTGCTGTATCTGCTGAGGTTG
CTGCGGAAANGCNAAACCNNACAATATTNTNGANGGNTTGCGAGTTTTTAGGTGTNAAGCCTGAAGAAGCTGTGCATATT
GGTGATGACCGCAGGAATGATCTCTGGGGAGCCAGGGATGCAGGCTGTGATGCCTGGCTCTGGGGCAGTGATGTTTACTC
TTTCAAGGAGAACCAAGCTCACATCATCAAATCTGGATTGCTATGCAGGTCGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45924.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis