Browse Element(s) Details


OsAffx.28932.1.S1_at

Description tigr:9635.m04676
TID=OsAffx.28932.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=HAD-superfamily hydrolase, subfamily IA, variant 1, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4652011/11HAD-superfamily hydrolase, subfamily IA, variant 1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46500Os.11488.1.S1_at11/117+27773143..27776265Tankyrase 2, putative, expressed
LOC_Os07g46500Os.44618.1.S1_s_at11/117+27773143..27776265Tankyrase 2, putative, expressed
LOC_Os07g46510Os.34873.1.S1_at11/117+27779362..27780298expressed protein
LOC_Os07g46520OsAffx.28932.1.S1_at11/117+27781970..27785226HAD-superfamily hydrolase, subfamily IA, variant 1 containing protein, expressed
LOC_Os07g46520Os.45924.1.S1_at11/117+27781970..27785226HAD-superfamily hydrolase, subfamily IA, variant 1 containing protein, expressed
LOC_Os07g46520Os.45924.1.S1_x_at11/117+27781970..27785226HAD-superfamily hydrolase, subfamily IA, variant 1 containing protein, expressed
LOC_Os07g46530OsAffx.16734.1.S1_at11/117+27788969..27789283hypothetical protein
LOC_Os07g46540Os.9234.1.S1_at10/117+27789427..27797803HEAT repeat family protein, expressed
LOC_Os07g46540Os.47368.1.S1_x_at10/117+27789427..27797803HEAT repeat family protein, expressed
LOC_Os07g46550OsAffx.16735.1.S1_at11/117+27798862..27800717Annexin family protein
LOC_Os07g46560Os.31545.1.S1_at11/117+27806098..27809817Ubiquitin ligase SINAT5, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28932.1.S1_at--328--3191Chr07:27782480..27782504 (25 bp)
CAATATTCTTGAAGGCTTGCGAGTT
LOC_Os07g46520
OsAffx.28932.1.S1_at--170--9571Chr07:27782474..27782498 (25 bp)
TCTTGAAGGCTTGCGAGTTTTTAGG
LOC_Os07g46520
OsAffx.28932.1.S1_at--943--6971Chr07:27782110..27782134 (25 bp)
GTCACCTGAAATAAGAAGGCCGGGA
LOC_Os07g46520
OsAffx.28932.1.S1_at--852--4491Chr07:27782092..27782116 (25 bp)
GCCGGGAGGTGTTGCATTTTTGTAC
LOC_Os07g46520
OsAffx.28932.1.S1_at--989--171Chr07:27782077..27782101 (25 bp)
ATTTTTGTACATAGCGGCAACCCTT
LOC_Os07g46520
OsAffx.28932.1.S1_at--170--8751Chr07:27782072..27782096 (25 bp)
TGTACATAGCGGCAACCCTTGTTGC
LOC_Os07g46520
OsAffx.28932.1.S1_at--1105--4311Chr07:27782056..27782080 (25 bp)
CCTTGTTGCTCCACTGATGTACATA
LOC_Os07g46520
OsAffx.28932.1.S1_at--520--8871Chr07:27782042..27782066 (25 bp)
TGATGTACATATTTTTCCAGAGAAT
LOC_Os07g46520
OsAffx.28932.1.S1_at--605--10291Chr07:27782029..27782053 (25 bp)
TTTCCAGAGAATAACCGATGGCAGT
LOC_Os07g46520
OsAffx.28932.1.S1_at--1004--2611Chr07:27782017..27782041 (25 bp)
AACCGATGGCAGTGTAGTATATATC
LOC_Os07g46520
OsAffx.28932.1.S1_at--797--10192Chr03:4735360..4735379 (20 bp)
TATATATCTGTATGACTGCATTTGC
NONE
Target Sequence 
CAATATTCTTGAAGGCTTGCGAGTTTTTAGGTGTGAAGCCTGAAGAAGCTGTGCATATTGGTGATGACCGCAGGAATGAT
CTCTGGGGAGCCAGGGATGCAGGCTGTGATGCCTGGCTCTGGGGCAGTGATGTTTACTCTTTCAAGGAGGTCGCAGAAAG
GATCGGAGTTAAGGTGTAAGGAGTCGTTCGTCCGCTGGGTCACCTGAAATAAGAAGGCCGGGAGGTGTTGCATTTTTGTA
CATAGCGGCAACCCTTGTTGCTCCACTGATGTACATATTTTTCCAGAGAATAACCGATGGCAGTGTAGTATATATCTGTA
TGACTGCATTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28932.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis