Browse Element(s) Details


Os.9234.1.S1_at

Description gb:AK073537.1
DB_XREF= gi:32983560
TID=Os.9234.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9234 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033043H21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033043H21, full insert sequence.
FL= gb:AK073537.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4654010/11HEAT repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46500Os.11488.1.S1_at11/117+27773143..27776265Tankyrase 2, putative, expressed
LOC_Os07g46500Os.44618.1.S1_s_at11/117+27773143..27776265Tankyrase 2, putative, expressed
LOC_Os07g46510Os.34873.1.S1_at11/117+27779362..27780298expressed protein
LOC_Os07g46520OsAffx.28932.1.S1_at11/117+27781970..27785226HAD-superfamily hydrolase, subfamily IA, variant 1 containing protein, expressed
LOC_Os07g46520Os.45924.1.S1_at11/117+27781970..27785226HAD-superfamily hydrolase, subfamily IA, variant 1 containing protein, expressed
LOC_Os07g46520Os.45924.1.S1_x_at11/117+27781970..27785226HAD-superfamily hydrolase, subfamily IA, variant 1 containing protein, expressed
LOC_Os07g46530OsAffx.16734.1.S1_at11/117+27788969..27789283hypothetical protein
LOC_Os07g46540Os.9234.1.S1_at10/117+27789427..27797803HEAT repeat family protein, expressed
LOC_Os07g46540Os.47368.1.S1_x_at10/117+27789427..27797803HEAT repeat family protein, expressed
LOC_Os07g46550OsAffx.16735.1.S1_at11/117+27798862..27800717Annexin family protein
LOC_Os07g46560Os.31545.1.S1_at11/117+27806098..27809817Ubiquitin ligase SINAT5, putative, expressed
LOC_Os07g46570Os.37097.1.S1_at11/117+27812440..27813522Glutaredoxin family protein, expressed
LOC_Os07g46580OsAffx.22532.2.S1_x_at11/117+27818221..27822069ATP-dependent RNA helicase DDX47, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0030261biological_processchromosome condensation
GO:0000796cellular_componentcondensin complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9234.1.S1_at--525--2752Chr07:27790137..27790161 (25 bp)
AAGACTCAGAAGACAGTGCTCCAAT
LOC_Os07g46540
Os.9234.1.S1_at--795--8231Chr07:27789871..27789895 (25 bp)
GGCAACAACTCCTCTCTGGGAAGAT
LOC_Os07g46540
Os.9234.1.S1_at--114--9511NONE
TCTCGCCTAGAGATCTTGGAGTTCT
NONE
Os.9234.1.S1_at--899--1751Chr07:27789730..27789754 (25 bp)
ACCTGCTAAATCTTGGTCAGCTCCA
LOC_Os07g46540
Os.9234.1.S1_at--375--7771Chr07:27789716..27789740 (25 bp)
GGTCAGCTCCACACGGAACGGTTTG
LOC_Os07g46540
Os.9234.1.S1_at--247--8171Chr07:27789702..27789726 (25 bp)
GGAACGGTTTGCTGGATGCTGATAT
LOC_Os07g46540
Os.9234.1.S1_at--282--6071Chr07:27789637..27789661 (25 bp)
GAGTTCGGTATCTAGTCTCCTTGCC
LOC_Os07g46540
Os.9234.1.S1_at--143--10411Chr07:27789598..27789622 (25 bp)
TTTTGTTCGTTACGATTTGCGCTGC
LOC_Os07g46540
Os.9234.1.S1_at--282--5511Chr07:27789571..27789595 (25 bp)
GAACAAATCTATACTCGCTTGGTCG
LOC_Os07g46540
Os.9234.1.S1_at--466--9911Chr07:27789560..27789584 (25 bp)
TACTCGCTTGGTCGAATCCAGAACT
LOC_Os07g46540
Os.9234.1.S1_at--210--6991Chr07:27789517..27789541 (25 bp)
GTACCTGTATGTTGTCTGTAGACTG
LOC_Os07g46540
Target Sequence 
AAGACTCAGAAGACAGTGCTCCAATNAGACGTGTGTCTCGCAGAAGACCAGTTAGGTGATGCCGAACTGTAATATGGACC
ANGTGGCAACAACTCCTCTCTGGGAAGATCTCGCCTAGAGATCTTGGAGTTCTGAAGCAANTGGTCTCCCTGGCGCTTGT
CCCACCAGAAACTCTATCTAACGCCGATATATTTGTTGAATCATAATGTTTATAAGCCTGCGTTGACCTGCTAAATCTTG
GTCAGCTCCACACGGAACGGTTTGCTGGATGCTGATATTTCATCTAGTAGNTTGCCTCTGATTGATAATCCGTAATTGGA
GTTCGGTATCTAGTCTCCTTGCCNCGTATGTTGAATTTTTTGTTCGTTACGATTTGCGCTGCNNGAACAAATCTATACTC
GCTTGGTCGAATCCAGAACTNGGTACTACTAGAGAGATGTACCTGTATGTTGTCTGTAGACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9234.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis