Browse Element(s) Details


Os.37097.1.S1_at

Description gb:AK060696.1
DB_XREF= gi:32970714
TID=Os.37097.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37097 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Arabidopsis thaliana chromosome 5, At5g13810 (OJ1477_F01.28), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-030-D09, full insert sequence.
FL= gb:AK060696.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4657011/11Glutaredoxin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46530OsAffx.16734.1.S1_at11/117+27788969..27789283hypothetical protein
LOC_Os07g46540Os.9234.1.S1_at10/117+27789427..27797803HEAT repeat family protein, expressed
LOC_Os07g46540Os.47368.1.S1_x_at10/117+27789427..27797803HEAT repeat family protein, expressed
LOC_Os07g46550OsAffx.16735.1.S1_at11/117+27798862..27800717Annexin family protein
LOC_Os07g46560Os.31545.1.S1_at11/117+27806098..27809817Ubiquitin ligase SINAT5, putative, expressed
LOC_Os07g46570Os.37097.1.S1_at11/117+27812440..27813522Glutaredoxin family protein, expressed
LOC_Os07g46580OsAffx.22532.2.S1_x_at11/117+27818221..27822069ATP-dependent RNA helicase DDX47, putative, expressed
LOC_Os07g46590Os.14772.1.S1_s_at11/117+27824101..27831876Chromodomain-helicase-DNA-binding protein, putative, expressed
LOC_Os07g46590Os.11138.1.S1_a_at11/117+27824101..27831876Chromodomain-helicase-DNA-binding protein, putative, expressed
LOC_Os07g46590Os.11138.2.S1_x_at11/117+27824101..27831876Chromodomain-helicase-DNA-binding protein, putative, expressed
LOC_Os07g46590Os.11138.1.S2_a_at11/117+27824101..27831876Chromodomain-helicase-DNA-binding protein, putative, expressed
LOC_Os07g46590Os.14772.1.S1_x_at2/117+27824101..27831876Chromodomain-helicase-DNA-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005489molecular_functionelectron transporter activity
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37097.1.S1_at--372--1031Chr07:27812962..27812986 (25 bp)
AGGTCAAGCAGCTCCACGAGAGCGG
LOC_Os07g46570
Os.37097.1.S1_at--424--3391Chr07:27812798..27812822 (25 bp)
CAGCGCTGCGGCGATTGCAACGAGA
LOC_Os07g46570
Os.37097.1.S1_at--1098--1431Chr07:27812776..27812800 (25 bp)
AGAACGGATTGGTACGCTGCCCTAA
LOC_Os07g46570
Os.37097.1.S1_at--435--3831Chr07:27812760..27812784 (25 bp)
CTGCCCTAATTGCTGTTCTTGATCG
LOC_Os07g46570
Os.37097.1.S1_at--1083--10711Chr07:27812751..27812775 (25 bp)
TTGCTGTTCTTGATCGCCAAAAAAC
LOC_Os07g46570
Os.37097.1.S1_at--544--10651Chr07:27812717..27812741 (25 bp)
TTCCAATTCAATTCGAGCTGCTAAT
LOC_Os07g46570
Os.37097.1.S1_at--114--5251Chr07:27812670..27812694 (25 bp)
GAATCAAGAACAGAGGCGCCTTTCG
LOC_Os07g46570
Os.37097.1.S1_at--5--4571Chr07:27812655..27812679 (25 bp)
GCGCCTTTCGGTTTCTGGGTGTGAT
LOC_Os07g46570
Os.37097.1.S1_at--417--7411Chr07:27812635..27812659 (25 bp)
GTGATTTGTGTTCATCCGATTCATT
LOC_Os07g46570
Os.37097.1.S1_at--65--2591Chr07:27812577..27812601 (25 bp)
AACGAATTGTTCTTGACTCCTTGAT
LOC_Os07g46570
Os.37097.1.S1_at--785--5871Chr07:27812508..27812532 (25 bp)
GAGCCGATGGCTGCATGTATGTATT
LOC_Os07g46570
Target Sequence 
AGGTCAAGCAGCTCCACGAGAGCGGCCAGCTGCGGCGCCTCCTCGACGGCGCCGCCGGCCAGGACCCGGCCTACGTCTGC
GACGGCTGCGGCGGCGTCCGCTTCGTCCCCTGCACCGCCTGCGGCGGCGGCCGCAAGGTGTTCGTCGAGGAGGAGGATCG
CGTGCAGCGCTGCGGCGATTGCAACGAGAACGGATTGGTACGCTGCCCTAATTGCTGTTCTTGATCGCCAAAAAACACAT
GATCTTTCCAATTCAATTCGAGCTGCTAATTACTAAAGGATTAGAGGCTTTAGAATCAAGAACAGAGGCGCCTTTCGGTT
TCTGGGTGTGATTTGTGTTCATCCGATTCATTTGGGGGATTGGATTTGCTGCTCATGGATGAGAGAACGAATTGTTCTTG
ACTCCTTGATGCAAAAATTGCCATGAGGTGTGGCGATTGAAAAAAAATTAATAAGAGCCGATGGCTGCATGTATGTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37097.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis