Browse Element(s) Details


Os.14772.1.S1_x_at

Description gb:BI807148
DB_XREF= gi:15854352
DB_XREF=S084F08
CLONE=S084F08
TID=Os.14772.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.14772 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g465902/11Chromodomain-helicase-DNA-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46550OsAffx.16735.1.S1_at11/117+27798862..27800717Annexin family protein
LOC_Os07g46560Os.31545.1.S1_at11/117+27806098..27809817Ubiquitin ligase SINAT5, putative, expressed
LOC_Os07g46570Os.37097.1.S1_at11/117+27812440..27813522Glutaredoxin family protein, expressed
LOC_Os07g46580OsAffx.22532.2.S1_x_at11/117+27818221..27822069ATP-dependent RNA helicase DDX47, putative, expressed
LOC_Os07g46590Os.14772.1.S1_s_at11/117+27824101..27831876Chromodomain-helicase-DNA-binding protein, putative, expressed
LOC_Os07g46590Os.11138.1.S1_a_at11/117+27824101..27831876Chromodomain-helicase-DNA-binding protein, putative, expressed
LOC_Os07g46590Os.11138.2.S1_x_at11/117+27824101..27831876Chromodomain-helicase-DNA-binding protein, putative, expressed
LOC_Os07g46590Os.11138.1.S2_a_at11/117+27824101..27831876Chromodomain-helicase-DNA-binding protein, putative, expressed
LOC_Os07g46590Os.14772.1.S1_x_at2/117+27824101..27831876Chromodomain-helicase-DNA-binding protein, putative, expressed
LOC_Os07g46600Os.27129.1.S1_at11/117+27839695..27843713RNA pseudouridylate synthase family protein, expressed
LOC_Os07g46610Os.44613.1.S1_at11/117+27844412..27846100Cis-zeatin O-glucosyltransferase 2, putative, expressed
LOC_Os07g46620Os.44611.1.S1_at11/117+27849103..27853387expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006333biological_processchromatin assembly or disassembly
GO:0008283biological_processcell proliferation
GO:0009739biological_processresponse to gibberellic acid stimulus
GO:0016481biological_processnegative regulation of transcription
GO:0016568biological_processchromatin modification
GO:0048364biological_processroot development
GO:0003677molecular_functionDNA binding
GO:0003678molecular_functionDNA helicase activity
GO:0003682molecular_functionchromatin binding
GO:0004386molecular_functionhelicase activity
GO:0005524molecular_functionATP binding
GO:0008094molecular_functionDNA-dependent ATPase activity
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14772.1.S1_x_at--956--4211NONE
CCGTTCAATTGGAAATTCTTGTTTG
NONE
Os.14772.1.S1_x_at--972--9731NONE
TCAATTGGAAATTCTTGTTTGAAGA
NONE
Os.14772.1.S1_x_at--367--7311Chr07:27824541..27824565 (25 bp)
GTGCTGGAACCTGATGTGGACCACA
LOC_Os07g46590
Os.14772.1.S1_x_at--1017--2271NONE
AAATGCCACGGGGTTCTGAGGAGAT
NONE
Os.14772.1.S1_x_at--691--8051Chr07:27824475..27824499 (25 bp)
GGAGATGCTGGCACCTTTAGCAGAT
LOC_Os07g46590
Os.14772.1.S1_x_at--642--6091NONE
GAGTCTAGAAAATTTTGTCGGTCCG
NONE
Os.14772.1.S1_x_at--734--8711NONE
TGTCGGTCCGTTTTGTGATCTAATA
NONE
Os.14772.1.S1_x_at--691--5211NONE
GAATATTTCACGTTGGGATGTTTTA
NONE
Os.14772.1.S1_x_at--1022--10491NONE
TTAAGAAGTTCATCTCAGCCATGAT
NONE
Os.14772.1.S1_x_at--432--9791NONE
TAAGAAGTTCATCTCAGCCATGATC
NONE
Os.14772.1.S1_x_at--986--2731NONE
AAGAAGTTCATCTCAGCCATGATCT
NONE
Target Sequence 
CCGTTCAATTGGAAATTCTTGTTTGAAGAAAAAAAAAGATAATGAAGTGCTGGAACCTGATGTGGACCACANGNTTTGAA
TCCGAGTCTAAAAGAAATGCCACGGGGTTCTGAGGAGATGCTGGCACCTTTAGCAGATGTACACACACAAGATNCTTCTG
ACNTNTGAAAAAAAACTTGAGGCCAGAGGAAGAGTCTAGAAAATTTTGTCGGTCCGTTTTGTGATCTAATAGAAGAATAT
TTCACGTTGGGATGTTTTAAGAAGTTCATCTCAGCCATGATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14772.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis