Browse Element(s) Details


Os.44613.1.S1_at

Description gb:CB647331
DB_XREF= gi:29642324
DB_XREF=OSJNEb10D12.r
CLONE=OSJNEb10D12
TID=Os.44613.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.44613 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cis-zeatin O-glucosyltransferase (P0496C02.21), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4661011/11Cis-zeatin O-glucosyltransferase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46580OsAffx.22532.2.S1_x_at11/117+27818221..27822069ATP-dependent RNA helicase DDX47, putative, expressed
LOC_Os07g46590Os.14772.1.S1_s_at11/117+27824101..27831876Chromodomain-helicase-DNA-binding protein, putative, expressed
LOC_Os07g46590Os.11138.1.S1_a_at11/117+27824101..27831876Chromodomain-helicase-DNA-binding protein, putative, expressed
LOC_Os07g46590Os.11138.2.S1_x_at11/117+27824101..27831876Chromodomain-helicase-DNA-binding protein, putative, expressed
LOC_Os07g46590Os.11138.1.S2_a_at11/117+27824101..27831876Chromodomain-helicase-DNA-binding protein, putative, expressed
LOC_Os07g46590Os.14772.1.S1_x_at2/117+27824101..27831876Chromodomain-helicase-DNA-binding protein, putative, expressed
LOC_Os07g46600Os.27129.1.S1_at11/117+27839695..27843713RNA pseudouridylate synthase family protein, expressed
LOC_Os07g46610Os.44613.1.S1_at11/117+27844412..27846100Cis-zeatin O-glucosyltransferase 2, putative, expressed
LOC_Os07g46620Os.44611.1.S1_at11/117+27849103..27853387expressed protein
LOC_Os07g46630Os.34191.1.S1_at11/117+27863332..27866538adenosine/AMP deaminase family protein, putative, expressed
LOC_Os07g46640Os.17163.1.S1_at10/117+27867221..27874787Glycosyl transferase family protein, expressed
LOC_Os07g46640OsAffx.20501.1.S1_at1/117+27867221..27874787Glycosyl transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009808biological_processlignin metabolism
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0047209molecular_functionconiferyl-alcohol glucosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.44613.1.S1_at--1063--8471Chr07:27844874..27844898 (25 bp)
TGGCGTGGCCGATGCACAGCGACCA
LOC_Os07g46610
Os.44613.1.S1_at--297--9031Chr07:27844862..27844886 (25 bp)
TGCACAGCGACCAGCCGTGGGATGC
LOC_Os07g46610
Os.44613.1.S1_at--622--6351Chr07:27844842..27844866 (25 bp)
GATGCCGAGCTCGTGTGCAAGTACC
LOC_Os07g46610
Os.44613.1.S1_at--144--6691Chr07:27844645..27844669 (25 bp)
GTTGCGCCAGGACATGGACGACCTC
LOC_Os07g46610
Os.44613.1.S1_at--62--7251Chr07:27844620..27844644 (25 bp)
GTCGCCTACCTGACGAGGTGATCGT
LOC_Os07g46610
Os.44613.1.S1_at--257--8811Chr07:27844555..27844579 (25 bp)
TGTTCGCGCCAAAAGATCACTGCTT
LOC_Os07g46610
Os.44613.1.S1_at--343--391Chr07:27844540..27844564 (25 bp)
ATCACTGCTTGCTTAGAACCACTCT
LOC_Os07g46610
Os.44613.1.S1_at--409--5431Chr07:27844525..27844549 (25 bp)
GAACCACTCTTTTGAATCTTATAAT
LOC_Os07g46610
Os.44613.1.S1_at--876--10291Chr07:27844492..27844516 (25 bp)
TTTCGTCCAGGATTTAAGCTACTAC
LOC_Os07g46610
Os.44613.1.S1_at--84--9771Chr07:27844462..27844486 (25 bp)
TAAGTTTGGGACTGTGCTGGTTGTC
LOC_Os07g46610
Os.44613.1.S1_at--27--9131Chr07:27844448..27844472 (25 bp)
TGCTGGTTGTCCTCGATCCTGGGCA
LOC_Os07g46610
Target Sequence 
TGGCGTGGCCGATGCACAGCGACCAGCCGTGGGATGCCGAGCTCGTGTGCAAGTACCTCGGCGCCGGCGTCCTCGTGCGG
CCGTGGGAGGAGCGCCACGACGTCANCGCCGGCGGCCGCGATACGCGAGGCGATCGAGAGGGCGATGGCGTCGGGGGACG
GCGCGGCGCTGCGCGCGAGGGCGGCGGCGATCGGGGAGGCCGTCCGCGCCGCCGTGGCCGAGGGCGGGTCGTTGCGCCAG
GACATGGACGACCTCGTCGCCTACCTGACGAGGTGATCGTCTCGTCGCCGGCGCGGCGGCTGAGCTGCACTCCATGCCGC
TGTTCGCGCCAAAAGATCACTGCTTGCTTAGAACCACTCTTTTGAATCTTATAATTGGGATAATTTCGTCCAGGATTTAA
GCTACTACTGTAATAAGTTTGGGACTGTGCTGGTTGTCCTCGATCCTGGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.44613.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis