Browse Element(s) Details


Os.34191.1.S1_at

Description gb:AK072514.1
DB_XREF= gi:32982537
TID=Os.34191.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34191 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative adenosine deaminase (P0496C02.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023133M21, full insert sequence.
FL= gb:AK072514.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4663011/11adenosine/AMP deaminase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46600Os.27129.1.S1_at11/117+27839695..27843713RNA pseudouridylate synthase family protein, expressed
LOC_Os07g46610Os.44613.1.S1_at11/117+27844412..27846100Cis-zeatin O-glucosyltransferase 2, putative, expressed
LOC_Os07g46620Os.44611.1.S1_at11/117+27849103..27853387expressed protein
LOC_Os07g46630Os.34191.1.S1_at11/117+27863332..27866538adenosine/AMP deaminase family protein, putative, expressed
LOC_Os07g46640Os.17163.1.S1_at10/117+27867221..27874787Glycosyl transferase family protein, expressed
LOC_Os07g46640OsAffx.20501.1.S1_at1/117+27867221..27874787Glycosyl transferase family protein, expressed
LOC_Os07g46650OsAffx.1524.1.S1_at11/117+27877952..27880702transposon protein, putative, Mutator sub-class
LOC_Os07g46660Os.10037.1.S1_at11/117+27881884..27886545Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os07g46660Os.6243.1.S1_at2/117+27881884..27886545Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os07g46660Os.44608.1.S1_at1/117+27881884..27886545Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os07g46670Os.11719.1.S1_at11/117+27887725..27889622expressed protein
LOC_Os07g46670Os.11719.1.S2_at11/117+27887725..27889622expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009168biological_processpurine ribonucleoside monophosphate biosynthesis
GO:0019239molecular_functiondeaminase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34191.1.S1_at--1065--4931Chr07:27865375..27865399 (25 bp)
GCATTGATCTTTCTGGCAATCCAGT
LOC_Os07g46630
Os.34191.1.S1_at--527--8031Chr07:27865406..27865521 (25 bp)
GGAGTGGGAGACATACTTGCCTGCC
LOC_Os07g46630
Os.34191.1.S1_at--21--10711Chr07:27865513..27865537 (25 bp)
TTGCCTGCCCTGGAACATGCTAAAG
LOC_Os07g46630
Os.34191.1.S1_at--525--8211Chr07:27865543..27865567 (25 bp)
GGAATCCCCATTACAATTCACTGTG
LOC_Os07g46630
Os.34191.1.S1_at--589--6031Chr07:27865693..27865717 (25 bp)
GAGATCCGAGCAGTGCTGGACTTCT
LOC_Os07g46630
Os.34191.1.S1_at--29--751Chr07:27865892..27865916 (25 bp)
ATGTTATGACCGGTGGTGCGCCTTC
LOC_Os07g46630
Os.34191.1.S1_at--860--711Chr07:27866186..27866210 (25 bp)
ATGATTCCGGCCTCTTTTCAACGAG
LOC_Os07g46630
Os.34191.1.S1_at--1014--691Chr07:27866219..27866243 (25 bp)
ATGAGTACTACCTCGTTGCATCTAC
LOC_Os07g46630
Os.34191.1.S1_at--326--6831Chr07:27866374..27866398 (25 bp)
GTTTCAACTAGCTCAGGACGCGGTG
LOC_Os07g46630
Os.34191.1.S1_at--693--9471Chr07:27866434..27866458 (25 bp)
TCTGAGAGAGTTGTTCGAGCGCGTC
LOC_Os07g46630
Os.34191.1.S1_at--961--7051Chr07:27866481..27866505 (25 bp)
GTAATCCAAGATGCGTTCCTGTCGA
LOC_Os07g46630
Target Sequence 
GCATTGATCTTTCTGGCAATCCAGTTGTGGGGGAGTGGGAGACATACTTGCCTGCCCTGGAACATGCTAAAGAGCTTGGA
ATCCCCATTACAATTCACTGTGGCGAGGTAGCAAACAGGAATGAGATCCGAGCAGTGCTGGACTTCTGCCCACAGAGGCT
GGGTCATGTCTGCTGCCTCAACGACGAGGAATGGAAGAAGTTGAAGTCGTTAATGATTCCAGTCGAGATATGCTTGACTT
CCAATGTTATGACCGGTGGTGCGCCTTCACTGGAGCTTCATCACTTCGCCGATCTGTACAACGCGAAGCACCCTCTGTCC
CTGTGCACCGATGATTCCGGCCTCTTTTCAACGAGCCTCTCAAATGAGTACTACCTCGTTGCATCTACCTTCGGTCTCAG
CAAGGCTGAGCTGTTTCAACTAGCTCAGGACGCGGTGGAGTTCGTGTTCGCCGGCGACGAGTTGAAGAGGTCTCTGAGAG
AGTTGTTCGAGCGCGTCGGGAAGGAGCTGACGACGTAGGGTAATCCAAGATGCGTTCCTGTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34191.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis