Browse Element(s) Details


Os.17163.1.S1_at

Description gb:CB096298
DB_XREF= gi:27920490
DB_XREF=AF53-Rpf_02_M09_T7_039.ab1
CLONE=C0000681
TID=Os.17163.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.17163 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative UDP-N-acetylglucosamine--dolichyl-phosp hate N-acetylglucosaminephosphotransferase (P0496C02.27), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4664010/11Glycosyl transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46600Os.27129.1.S1_at11/117+27839695..27843713RNA pseudouridylate synthase family protein, expressed
LOC_Os07g46610Os.44613.1.S1_at11/117+27844412..27846100Cis-zeatin O-glucosyltransferase 2, putative, expressed
LOC_Os07g46620Os.44611.1.S1_at11/117+27849103..27853387expressed protein
LOC_Os07g46630Os.34191.1.S1_at11/117+27863332..27866538adenosine/AMP deaminase family protein, putative, expressed
LOC_Os07g46640Os.17163.1.S1_at10/117+27867221..27874787Glycosyl transferase family protein, expressed
LOC_Os07g46640OsAffx.20501.1.S1_at1/117+27867221..27874787Glycosyl transferase family protein, expressed
LOC_Os07g46650OsAffx.1524.1.S1_at11/117+27877952..27880702transposon protein, putative, Mutator sub-class
LOC_Os07g46660Os.10037.1.S1_at11/117+27881884..27886545Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os07g46660Os.6243.1.S1_at2/117+27881884..27886545Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os07g46660Os.44608.1.S1_at1/117+27881884..27886545Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os07g46670Os.11719.1.S1_at11/117+27887725..27889622expressed protein
LOC_Os07g46670Os.11719.1.S2_at11/117+27887725..27889622expressed protein
LOC_Os07g46680OsAffx.28871.1.S1_at1/117+27898684..27899599hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000271biological_processpolysaccharide biosynthesis
GO:0005783cellular_componentendoplasmic reticulum
GO:0003975molecular_functionUDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17163.1.S1_at--1020--2171Chr07:27868344..27868368 (25 bp)
ACACAGGACTGTTGACGGGTACCAA
LOC_Os07g46640
Os.17163.1.S1_at--389--8191Chr07:27868282..27868306 (25 bp)
GGAAGATGCACAGAGAGGACCCTTT
LOC_Os07g46640
Os.17163.1.S1_at--334--971Chr07:27868267..27868291 (25 bp)
AGGACCCTTTGCATAAGGCTGCTCA
LOC_Os07g46640
Os.17163.1.S1_at--571--911NONE
AGGCTGCTCATATTTCAGGCGTTGT
NONE
Os.17163.1.S1_at--988--6631Chr07:27867678..27867702 (25 bp)
GTTGTCATGCCTATTCTGCTTTTGG
LOC_Os07g46640
Os.17163.1.S1_at--1012--6791Chr07:27867586..27867610 (25 bp)
GTTATTACCTGACAGCTGTTCTCTC
LOC_Os07g46640
Os.17163.1.S1_at--1063--8031Chr07:27867509..27867533 (25 bp)
GGAGTAGCTGATGCAAGAACACCTT
LOC_Os07g46640
Os.17163.1.S1_at--1156--10571Chr07:27867458..27867482 (25 bp)
TTCTCATGACTTAGCATTTGCATCT
LOC_Os07g46640
Os.17163.1.S1_at--708--3731Chr07:27867374..27867398 (25 bp)
CTACATGAGATCTGAGGTGTGGCCT
LOC_Os07g46640
Os.17163.1.S1_at--730--8451Chr07:27867355..27867379 (25 bp)
TGGCCTTATGAGGTTGCTACGATAG
LOC_Os07g46640
Os.17163.1.S1_at--576--10731Chr07:27867269..27867292 (24 bp)
TTGCTTGCGCTACTCTTCTGAAAAT
LOC_Os07g46640
Target Sequence 
ACACAGGACTGTTGACGGGTACCAAAGATGGTAACTTGGTAAACATATTCCTTAGGATATTTGGAAGATGCACAGAGAGG
ACCCTTTGCATAAGGCTGCTCATATTTCAGGCGTTGTCATGCCTATTCTGCTTTTGGCNTGAGGTACATGATTACTGGAT
GGTACAAANTGATCACCNTGGACAGGATNCCNCGGCAATCNAAATCTGTTATTACCTGACAGCTGTTCTCTCTCGNCAAT
ATTTGTAGACTANCAGTAAACAACCAACCTAAATCTTCCNAATAGGAGTAGCTGATGCAAGAACACCTTACTTACTGTCC
ACAATTTTTTAAATTTTCTCATGACTTAGCATTTGCATCTAGTTTGTGTCAAGCCTTCGGGGTTTTGGAGTTCGTACCNT
TTTTTTTTTGTACAAAACAACTACATGAGATCTGAGGTGTGGCCTTATGAGGTTGCTACGATAGAGTTCCNTGAAGCTTT
NGATCGAAACANGACTTGTATTTTTGCAAACAGNTTCTTCAAGGNACCTTGCTTGCGCTACTCTTCTGAAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17163.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis