Browse Element(s) Details


OsAffx.28871.1.S1_at

Description tigr:9635.m04238
TID=OsAffx.28871.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g020601/11expressed protein
LOC_Os12g025401/11transposon protein, putative, Mutator sub-class, expressed
LOC_Os07g466801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g02010OsAffx.16785.1.S1_at11/118+641886..642197hypothetical protein
LOC_Os08g02020OsAffx.16783.1.S1_x_at2/118+646310..647932HCBT-like putative defense response protein, putative
LOC_Os08g02020OsAffx.3956.1.S1_at1/118+646310..647932HCBT-like putative defense response protein, putative
LOC_Os08g02030Os.19547.1.S1_at11/118+649404..651044HCBT-like putative defense response protein, putative, expressed
LOC_Os08g02030Os.19547.1.S1_x_at11/118+649404..651044HCBT-like putative defense response protein, putative, expressed
LOC_Os08g02030OsAffx.16783.1.S1_x_at2/118+649404..651044HCBT-like putative defense response protein, putative, expressed
LOC_Os08g02040OsAffx.5678.1.S1_x_at11/118+652201..655244pentatricopeptide, putative, expressed
LOC_Os08g02040Os.53314.1.S1_at11/118+652201..655244pentatricopeptide, putative, expressed
LOC_Os08g02050Os.14853.1.S1_at10/118+655822..661212protein kinase family protein, putative, expressed
LOC_Os08g02060Os.5714.1.S1_at10/118+664913..668380expressed protein
LOC_Os08g02060OsAffx.28871.1.S1_at1/118+664913..668380expressed protein
LOC_Os08g02070Os.4174.1.S1_at10/118+673011..675392Agamous-like MADS box protein AGL12, putative, expressed
LOC_Os08g02080Os.10438.1.S1_at11/118+676235..677788Rickettsia 17 kDa surface antigen family protein, expressed
LOC_Os08g02094OsAffx.5679.1.S1_at11/118+679941..687533GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os08g02094Os.52874.1.S1_at11/118+679941..687533GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os08g02094Os.48426.1.A1_at1/118+679941..687533GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os08g02110Os.52833.1.S1_at11/118+690833..692229Peroxidase 47 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28871.1.S1_at--941--4320Chr08:664962..664985 (24 bp)
ATCTTAGCCAAAAGGCCGAGAAAGA
LOC_Os08g02060
OsAffx.28871.1.S1_at--38--1431Chr07:25322652..25322672 (21 bp)
AGAAAGAGCACTGCACCTGGTCTGT
NONE
OsAffx.28871.1.S1_at--1002--5071Chr07:25322660..25322684 (25 bp)
GCACCTGGTCTGTTACTTGGGCTAA
NONE
OsAffx.28871.1.S1_at--557--7451Chr07:25322666..25322690 (25 bp)
GGTCTGTTACTTGGGCTAATTGTCT
NONE
OsAffx.28871.1.S1_at--580--6771Chr07:25322671..25322695 (25 bp)
GTTACTTGGGCTAATTGTCTTGCAA
NONE
OsAffx.28871.1.S1_at--574--8651Chr07:25322677..25322701 (25 bp)
TGGGCTAATTGTCTTGCAATCATAA
NONE
OsAffx.28871.1.S1_at--493--3071Chr07:25322694..25322718 (25 bp)
AATCATAACTCTCCAGAGGCCCAAA
NONE
OsAffx.28871.1.S1_at--1122--9191Chr07:25322705..25322729 (25 bp)
TCCAGAGGCCCAAAAAAGACACAGG
NONE
OsAffx.28871.1.S1_at--412--751Chr07:25322735..25322759 (25 bp)
ATGTAGATGCCCTTCCAGGCCCAAA
NONE
OsAffx.28871.1.S1_at--174--7552Chr07:25322989..25323013 (25 bp)
GGGCCTCCATGCAAAAAAGCCAACC
NONE
OsAffx.28871.1.S1_at--908--8951Chr07:25322998..25323022 (25 bp)
TGCAAAAAAGCCAACCCAGGAAGGG
NONE
Target Sequence 
ATCTTAGCCAAAAGGCCGAGAAAGAGCACTGCACCTGGTCTGTTACTTGGGCTAATTGTCTTGCAATCATAACTCTCCAG
AGGCCCAAAAAAGACACAGGGGCCCATGTAGATGCCCTTCCAGGCCCAAACCACGGGAAGGCCGAGGGCGGCAAGGGGCC
TCCATGCAAAAAAGCCAACCCAGGAAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28871.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis