Browse Element(s) Details


Os.52833.1.S1_at

Description gb:AK069503.1
DB_XREF= gi:32979527
TID=Os.52833.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52833 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023019J18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023019J18, full insert sequence.
FL= gb:AK069503.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0211011/11Peroxidase 47 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g02060Os.5714.1.S1_at10/118+664913..668380expressed protein
LOC_Os08g02060OsAffx.28871.1.S1_at1/118+664913..668380expressed protein
LOC_Os08g02070Os.4174.1.S1_at10/118+673011..675392Agamous-like MADS box protein AGL12, putative, expressed
LOC_Os08g02080Os.10438.1.S1_at11/118+676235..677788Rickettsia 17 kDa surface antigen family protein, expressed
LOC_Os08g02094OsAffx.5679.1.S1_at11/118+679941..687533GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os08g02094Os.52874.1.S1_at11/118+679941..687533GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os08g02094Os.48426.1.A1_at1/118+679941..687533GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os08g02110Os.52833.1.S1_at11/118+690833..692229Peroxidase 47 precursor, putative, expressed
LOC_Os08g02120Os.12780.1.S1_at11/118+694902..697658Fructokinase, putative, expressed
LOC_Os08g02130Os.6320.1.S1_at10/118+698212..707503RNA recognition motif family protein, expressed
LOC_Os08g02130Os.54405.1.S1_at2/118+698212..707503RNA recognition motif family protein, expressed
LOC_Os08g02130OsAffx.21108.1.S1_x_at1/118+698212..707503RNA recognition motif family protein, expressed
LOC_Os08g02130OsAffx.8723.1.S1_at1/118+698212..707503RNA recognition motif family protein, expressed
LOC_Os08g02140Os.10262.1.S1_at11/118+709296..713823U-box domain containing protein, expressed
LOC_Os08g02150Os.57291.1.S1_at7/118+714171..715518expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52833.1.S1_at--193--7771Chr08:691710..691734 (25 bp)
GGTGAACATGTTCGCCATGAACCAG
LOC_Os08g02110
Os.52833.1.S1_at--573--671Chr08:691726..691750 (25 bp)
ATGAACCAGGCATACTTCTTCTACG
LOC_Os08g02110
Os.52833.1.S1_at--182--7111Chr08:691813..691837 (25 bp)
GTCAGGACATCTTGCAGGGTCGTCA
LOC_Os08g02110
Os.52833.1.S1_at--1130--3051Chr08:691863..691887 (25 bp)
AATCTATATGTCCTGAATTGCCCGC
LOC_Os08g02110
Os.52833.1.S1_at--456--9011Chr08:691876..691900 (25 bp)
TGAATTGCCCGCCTTAGCTCTTTAG
LOC_Os08g02110
Os.52833.1.S1_at--529--6073Chr09:15580873..15580892 (20 bp)
GAGTTTAACTGGTTGGTGCATGCAA
NONE
Os.52833.1.S1_at--882--291Chr08:691949..691973 (25 bp)
ATACCGTATACTCGACGTCTTTCGT
LOC_Os08g02110
Os.52833.1.S1_at--624--7551Chr08:691972..691996 (25 bp)
GTGGCCGCGTCTTTGTGAACTTAAA
LOC_Os08g02110
Os.52833.1.S1_at--304--1211Chr08:692010..692034 (25 bp)
AGTTTGCCGGAAATGCTACAGTACC
LOC_Os08g02110
Os.52833.1.S1_at--986--6931Chr08:692047..692071 (25 bp)
GTAGTGTCAGTTTGTATTGTGGCAT
LOC_Os08g02110
Os.52833.1.S1_at--352--3191Chr08:692171..692195 (25 bp)
CAATCATGCATGTCACTAGTTTAGA
LOC_Os08g02110
Target Sequence 
GGTGAACATGTTCGCCATGAACCAGGCATACTTCTTCTACGCGNTCCAGCAGGGGATGCTCAAGATGGGGCAGCTCGACC
TCAAGGAGGGCGACGCCGGCGAGGTCAGGACATCTTGCAGGGTCGTCAACTGACACTCCNTTGATCATACCAACAATCTA
TATGTCCTGAATTGCCCGCCTTAGCTCTTTAGCTTAAGCTTTTGAGTTTAACTGGTTGGTGCATGCAACTCAATAATAAC
ATACCGTATACTCGACGTCTTTCGTGGCCGCGTCTTTGTGAACTTAAAATTGCAGCTAGCTAGTTTGCCGGAAATGCTAC
AGTACCCAAGGTATACAAGTAGTGTCAGTTTGTATTGTGGCATGGAGGCCATGTATGATAGTAGTAAGTATAGTAAGCTT
GCCAGAAATGCTACAGTTAGCAGCTGGTATAATTGTGGTACTGTATAGGAAAGATTGTAAAACAATCATGCATGTCACTA
GTTTAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52833.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis