Browse Element(s) Details


OsAffx.21108.1.S1_x_at

Description gb:NM_193955.1
DB_XREF= gi:34914993
GEN=OSJNBb0093M23.17
TID=OsAffx.21108.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBb0093M23.17 (OSJNBb0093M23.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g288504/11hypothetical protein
LOC_Os03g472402/11expressed protein
LOC_Os02g138501/11Leucine Rich Repeat family protein, expressed
LOC_Os08g021301/11RNA recognition motif family protein, expressed
LOC_Os11g314301/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g28800OsAffx.23437.1.S1_at11/111+16461601..16462081retrotransposon, putative, centromere-specific
LOC_Os01g28810OsAffx.23438.1.S1_at9/111+16463090..16468000expressed protein
LOC_Os01g28820OsAffx.21110.1.S1_s_at11/111+16471696..16472100hypothetical protein
LOC_Os01g28830OsAffx.11248.1.S1_at11/111+16472672..16474341hypothetical protein
LOC_Os01g28830OsAffx.29962.1.S1_at1/111+16472672..16474341hypothetical protein
LOC_Os01g28840Os.33968.1.S1_at11/111+16478428..16480910C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed
LOC_Os01g28840Os.5608.3.S1_x_at1/111+16478428..16480910C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed
LOC_Os01g28850OsAffx.21108.1.S1_at5/111+16483844..16484083hypothetical protein
LOC_Os01g28850OsAffx.21108.1.S1_x_at4/111+16483844..16484083hypothetical protein
LOC_Os01g28870NANA1+16491635..16497790retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009910biological_processnegative regulation of flower development
GO:0009944biological_processpolarity specification of adaxial/abaxial axis
GO:0009965biological_processleaf morphogenesis
GO:0035281biological_processpre-microRNA export from nucleus
GO:0048364biological_processroot development
GO:0048367biological_processshoot development
GO:0005635cellular_componentnuclear envelope
GO:0003723molecular_functionRNA binding
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004702molecular_functionreceptor signaling protein serine/threonine kinase activity
GO:0005487molecular_functionnucleocytoplasmic transporter activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21108.1.S1_x_at--122--1851Chr01:16483944..16483968 (25 bp)
ACGCTAGCGAGGGAGGTGGCACTCT
LOC_Os01g28850
OsAffx.21108.1.S1_x_at--1086--7511Chr01:16483959..16483983 (25 bp)
GTGGCACTCTGGGAATAAGGTCGTT
LOC_Os01g28850
OsAffx.21108.1.S1_x_at--613--3311Chr01:16483963..16483987 (25 bp)
CACTCTGGGAATAAGGTCGTTGGGC
LOC_Os01g28850
OsAffx.21108.1.S1_x_at--842--1011Chr01:16483995..16484019 (25 bp)
AGGTCGTGCGACGAGAAGGCCGCGC
LOC_Os01g28850
OsAffx.21108.1.S1_x_at--827--10011Chr01:16484287..16484311 (25 bp)
TAGCAATCGCGCCAGAGGCAGGATT
NONE
OsAffx.21108.1.S1_x_at--65--101745Chr11:7141512..7141536 (25 bp)
TTAGACACCTCAGCGCCAAATAGCA
NONE
OsAffx.21108.1.S1_x_at--356--9673Chr10:18606045..18606065 (21 bp)
TCAGCGCCAAATAGCACGGCGTTGA
NONE
OsAffx.21108.1.S1_x_at--928--3074Chr03:26682430..26682454 (25 bp)
AATAGCACGGCGTTGAATGCACGTT
LOC_Os03g47240
OsAffx.21108.1.S1_x_at--636--3334Chr03:26682435..26682455 (21 bp)
CACGGCGTTGAATGCACGTTGGCAC
LOC_Os03g47240
OsAffx.21108.1.S1_x_at--955--4038Chr01:16484715..16484739 (25 bp)
CGTTGAATGCACGTTGGCACGCCGA
NONE
OsAffx.21108.1.S1_x_at--1158--29913Chr11:10153775..10153798 (24 bp)
AATGCACGTTGGCACGCCGACTCAG
NONE
Target Sequence 
ACGCTAGCGAGGGAGGTGGCACTCTGGGAATAAGGTCGTTGGGCGAGGAGGAGGTCGTGCGACGAGAAGGCCGCGCGGGN
NNNNNNGNGNNNANNNNNGNNNGNNGGAGGNTNNNGGNNNNGGNNNNNNNNGNNNGGNNACTAGCAATCGCGCCAGAGGC
AGGATTGGCGAGGGNNCCAAATCGTATGGCGCTGAACTTAGACACCTCAGCGCCAAATAGCACGGCGTTGAATGCACGTT
GGCACGCCGACTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21108.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis