Browse Element(s) Details


OsAffx.21108.1.S1_at

Description gb:NM_193955.1
DB_XREF= gi:34914993
GEN=OSJNBb0093M23.17
TID=OsAffx.21108.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBb0093M23.17 (OSJNBb0093M23.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g288505/11hypothetical protein
LOC_Os03g472403/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g28800OsAffx.23437.1.S1_at11/111+16461601..16462081retrotransposon, putative, centromere-specific
LOC_Os01g28810OsAffx.23438.1.S1_at9/111+16463090..16468000expressed protein
LOC_Os01g28820OsAffx.21110.1.S1_s_at11/111+16471696..16472100hypothetical protein
LOC_Os01g28830OsAffx.11248.1.S1_at11/111+16472672..16474341hypothetical protein
LOC_Os01g28830OsAffx.29962.1.S1_at1/111+16472672..16474341hypothetical protein
LOC_Os01g28840Os.33968.1.S1_at11/111+16478428..16480910C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed
LOC_Os01g28840Os.5608.3.S1_x_at1/111+16478428..16480910C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed
LOC_Os01g28850OsAffx.21108.1.S1_at5/111+16483844..16484083hypothetical protein
LOC_Os01g28850OsAffx.21108.1.S1_x_at4/111+16483844..16484083hypothetical protein
LOC_Os01g28870NANA1+16491635..16497790retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21108.1.S1_at--568--11Chr01:16483912..16483936 (25 bp)
CCGGGCGAGGAAGAGGTTAGGCAAT
LOC_Os01g28850
OsAffx.21108.1.S1_at--1115--6711Chr01:16483927..16483951 (25 bp)
GTTAGGCAATGAGGAGGACGCTAGC
LOC_Os01g28850
OsAffx.21108.1.S1_at--1085--7511Chr01:16483959..16483983 (25 bp)
GTGGCACTCTGGGAATAAGGTCGTT
LOC_Os01g28850
OsAffx.21108.1.S1_at--614--3311Chr01:16483963..16483987 (25 bp)
CACTCTGGGAATAAGGTCGTTGGGC
LOC_Os01g28850
OsAffx.21108.1.S1_at--843--1011Chr01:16483995..16484019 (25 bp)
AGGTCGTGCGACGAGAAGGCCGCGC
LOC_Os01g28850
OsAffx.21108.1.S1_at--357--9673Chr10:18606045..18606065 (21 bp)
TCAGCGCCAAATAGCACGGCGTTGA
NONE
OsAffx.21108.1.S1_at--830--2254Chr03:26682429..26682453 (25 bp)
AAATAGCACGGCGTTGAATGCACGT
LOC_Os03g47240
OsAffx.21108.1.S1_at--813--294Chr03:26682431..26682455 (25 bp)
ATAGCACGGCGTTGAATGCACGTTG
LOC_Os03g47240
OsAffx.21108.1.S1_at--175--5113Chr01:16484709..16484733 (25 bp)
GCACGGCGTTGAATGCACGTTGGCA
NONE
OsAffx.21108.1.S1_at--888--1935Chr03:26682436..26682653 (25 bp)
ACGGCGTTGAATGCACGTTGGCACG
LOC_Os03g47240
OsAffx.21108.1.S1_at--954--4038Chr01:16484715..16484739 (25 bp)
CGTTGAATGCACGTTGGCACGCCGA
NONE
Target Sequence 
CCGGGCGAGGAAGAGGTTAGGCAATGAGGAGGACGCTAGCGAGGGAGGTGGCACTCTGGGAATAAGGTCGTTGGGCGAGG
AGGAGGTCGTGCGACGAGAAGGCCGCGCGGGNNNNNNNGNGNNNANNNNNGNNNGNNGGAGGNTNNNGGNNNNGGNNNNN
NNNGNNNGGNNACTAGCAATCGCGCCAGAGGCAGGATTGGCGAGGGNNCCAAATCGTATGGCGCTGAACTTAGACACCTC
AGCGCCAAATAGCACGGCGTTGAATGCACGTTGGCACGCCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21108.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis