Browse Element(s) Details


Os.12780.1.S1_at

Description gb:AF429947.1
DB_XREF= gi:16566703
TID=Os.12780.1
CNT=59
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12780 (NCBI UniGene Cluster)
DEF=Oryza sativa putative fructokinase II mRNA, complete cds.
PROD=putative fructokinase II
FL= gb:AK070120.1 gb:AK061391.1 gb:AK099353.1 gb:AB110164.1 gb:AF429947.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0212011/11Fructokinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g02070Os.4174.1.S1_at10/118+673011..675392Agamous-like MADS box protein AGL12, putative, expressed
LOC_Os08g02080Os.10438.1.S1_at11/118+676235..677788Rickettsia 17 kDa surface antigen family protein, expressed
LOC_Os08g02094OsAffx.5679.1.S1_at11/118+679941..687533GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os08g02094Os.52874.1.S1_at11/118+679941..687533GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os08g02094Os.48426.1.A1_at1/118+679941..687533GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os08g02110Os.52833.1.S1_at11/118+690833..692229Peroxidase 47 precursor, putative, expressed
LOC_Os08g02120Os.12780.1.S1_at11/118+694902..697658Fructokinase, putative, expressed
LOC_Os08g02130Os.6320.1.S1_at10/118+698212..707503RNA recognition motif family protein, expressed
LOC_Os08g02130Os.54405.1.S1_at2/118+698212..707503RNA recognition motif family protein, expressed
LOC_Os08g02130OsAffx.21108.1.S1_x_at1/118+698212..707503RNA recognition motif family protein, expressed
LOC_Os08g02130OsAffx.8723.1.S1_at1/118+698212..707503RNA recognition motif family protein, expressed
LOC_Os08g02140Os.10262.1.S1_at11/118+709296..713823U-box domain containing protein, expressed
LOC_Os08g02150Os.57291.1.S1_at7/118+714171..715518expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12780.1.S1_at--1073--8271Chr08:696821..696845 (25 bp)
GGCATCCTCTCCATCTGGAAGGAGG
LOC_Os08g02120
Os.12780.1.S1_at--1063--6211Chr08:696842..696866 (25 bp)
GAGGCCGACTTCATCAAGGTGAGCG
LOC_Os08g02120
Os.12780.1.S1_at--328--7311Chr08:696917..696941 (25 bp)
GTGCTCTCGCTCTGGTTCGACGGCC
LOC_Os08g02120
Os.12780.1.S1_at--119--7991Chr08:696974..696998 (25 bp)
GGATGCAGGTACTTCACCAAGGACT
LOC_Os08g02120
Os.12780.1.S1_at--1109--5711Chr08:697097..697197 (25 bp)
GACTCCATCTTCCACAACGAGGAGA
LOC_Os08g02120
Os.12780.1.S1_at--955--871Chr08:697207..697231 (25 bp)
AGGCGCTCAAGTTCTCGAACGCGTG
LOC_Os08g02120
Os.12780.1.S1_at--503--8091Chr08:697233..697257 (25 bp)
GGAGCCATCTGCACCACCAAGAAGG
LOC_Os08g02120
Os.12780.1.S1_at--1067--1471Chr08:697305..697329 (25 bp)
AGCAAGGCAGCCAACTAGAGCTCCT
LOC_Os08g02120
Os.12780.1.S1_at--411--1391Chr08:697317..697341 (25 bp)
AACTAGAGCTCCTCGGTTTCGTCGT
LOC_Os08g02120
Os.12780.1.S1_at--1151--7691Chr08:697374..697397 (24 bp)
GGGTCGATTTAATTTAGTTGCTGCT
LOC_Os08g02120
Os.12780.1.S1_at--527--10051Chr08:697387..697411 (25 bp)
TAGTTGCTGCTTCGTTTTAGACAAG
LOC_Os08g02120
Target Sequence 
GGCATCCTCTCCATCTGGAAGGAGGCCGACTTCATCAAGGTGAGCGACGACGAGGTCGCCTTCCTCACCCAGGGCGACGC
CAACGACGAGAAGAACGTGCTCTCGCTCTGGTTCGACGGCCTCAAGCTCCTCATCGTCACCGACGGCGAGAAGGGATGCA
GGTACTTCACCAAGGACTTCAAGGGCTCCGTCCCCGGCTTCTCCGTCAACACCGTCGACACCACCGGCGCCGGCGACGCC
TTCGTCGGCTCCCTCCTCGTCAACGTCGCCAAGGACGACTCCATCTTCCACAACGAGGAGAAGCTGAGGGAGGCGCTCAA
GTTCTCGAACGCGTGCGGAGCCATCTGCACCACCAAGAAGGGTGCCATCCCGGCGCTGCCCACCGTCGCCGTCGCGCAGG
AGCTCATCAGCAAGGCAGCCAACTAGAGCTCCTCGGTTTCGTCGTCGATCGCCGCCATTGGGGGCCTCGGAATTTTAGGG
TCGATTTAATTTAGTTGCTGCTTCGTTTTAGACAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12780.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis