Browse Element(s) Details


Os.6320.1.S1_at

Description gb:AK102710.1
DB_XREF= gi:32987919
TID=Os.6320.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6320 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033104J20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033104J20, full insert sequence.
FL= gb:AK102710.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0213010/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g02070Os.4174.1.S1_at10/118+673011..675392Agamous-like MADS box protein AGL12, putative, expressed
LOC_Os08g02080Os.10438.1.S1_at11/118+676235..677788Rickettsia 17 kDa surface antigen family protein, expressed
LOC_Os08g02094OsAffx.5679.1.S1_at11/118+679941..687533GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os08g02094Os.52874.1.S1_at11/118+679941..687533GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os08g02094Os.48426.1.A1_at1/118+679941..687533GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os08g02110Os.52833.1.S1_at11/118+690833..692229Peroxidase 47 precursor, putative, expressed
LOC_Os08g02120Os.12780.1.S1_at11/118+694902..697658Fructokinase, putative, expressed
LOC_Os08g02130Os.6320.1.S1_at10/118+698212..707503RNA recognition motif family protein, expressed
LOC_Os08g02130Os.54405.1.S1_at2/118+698212..707503RNA recognition motif family protein, expressed
LOC_Os08g02130OsAffx.21108.1.S1_x_at1/118+698212..707503RNA recognition motif family protein, expressed
LOC_Os08g02130OsAffx.8723.1.S1_at1/118+698212..707503RNA recognition motif family protein, expressed
LOC_Os08g02140Os.10262.1.S1_at11/118+709296..713823U-box domain containing protein, expressed
LOC_Os08g02150Os.57291.1.S1_at7/118+714171..715518expressed protein
LOC_Os08g02160OsAffx.16786.1.S1_at11/118+725881..728248No apical meristem protein, expressed
LOC_Os08g02170Os.51205.1.S1_at11/118+728293..729317expressed protein
LOC_Os08g02180Os.52993.1.S1_at11/118+728348..728904expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6320.1.S1_at--320--7071Chr08:698772..698796 (25 bp)
GTAATGTACTTTTCTGGTGGCTTCA
LOC_Os08g02130
Os.6320.1.S1_at--534--8491Chr08:698755..698779 (25 bp)
TGGCTTCATGCATCATCTTCGGTGA
LOC_Os08g02130
Os.6320.1.S1_at--157--2271Chr08:698725..698749 (25 bp)
AAATCAGTGACCTTTTGGGCTCCTC
LOC_Os08g02130
Os.6320.1.S1_at--166--251Chr08:698540..698564 (25 bp)
ATATAACTCATGTGGCTGCCTTAAA
LOC_Os08g02130
Os.6320.1.S1_at--201--8811Chr08:698524..698548 (25 bp)
TGCCTTAAAACTGAGCTCCCGTGCT
LOC_Os08g02130
Os.6320.1.S1_at--1120--7051Chr08:698488..698511 (24 bp)
GTAAGTAGTTATGCTCGTTTCTCAA
LOC_Os08g02130
Os.6320.1.S1_at--30--4031NONE
CGTTTCTCAAGTTTTGTACTGCCAA
NONE
Os.6320.1.S1_at--449--6011Chr08:698404..698428 (25 bp)
GAGAGTGCAGCTTACGTATGTCGGA
LOC_Os08g02130
Os.6320.1.S1_at--936--9431Chr08:698384..698408 (25 bp)
TCGGATGCCAATGTACTGACTGTAA
LOC_Os08g02130
Os.6320.1.S1_at--597--3431Chr08:698337..698361 (25 bp)
CAGTACACCGGTTTCCAGTATTTAT
LOC_Os08g02130
Os.6320.1.S1_at--143--3011Chr08:698306..698330 (25 bp)
AATGAGCTCGCATTTTTTAGCCGCC
LOC_Os08g02130
Target Sequence 
GTAATGTACTTTTCTGGTGGCTTCATGCATCATCTTCGGTGAACAGAAAATCAGTGACCTTTTGGGCTCCTCAAATTGAA
ATCTANCCATCCAGCTGCAAAAGTATAATCAGCACAGGAGAATCCAGACATCATTAGCAAACTTCTTAGAAACCTTCTTT
TTTTTCTAGTTTGAAGGAGGGAAGAATTTTCTGAAAGTCGTGTAGGACTTGTAGTTTGCAGGGAAACGGTGTATATAACT
CATGTGGCTGCCTTAAAACTGAGCTCCCGTGCTCCTTNCGCTTTCGTAAGTAGTTATGCTCGTTTCTCAAGTTTTGTACT
GCCAAGAAATTTATGATCTCCCGTGTTAAAAAGGATAACGGATGGTTAGAGAGTGCAGCTTACGTATGTCGGATGCCAAT
GTACTGACTGTAAGCTGAGCAATTATTCATCACAACAGTACACCGGTTTCCAGTATTTATTGTTCGAATGAGCTCGCATT
TTTTAGCCGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6320.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis