Browse Element(s) Details


OsAffx.5679.1.S1_at

Description tigr:9636.m00108
TID=OsAffx.5679.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0209411/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g02040OsAffx.5678.1.S1_x_at11/118+652201..655244pentatricopeptide, putative, expressed
LOC_Os08g02040Os.53314.1.S1_at11/118+652201..655244pentatricopeptide, putative, expressed
LOC_Os08g02050Os.14853.1.S1_at10/118+655822..661212protein kinase family protein, putative, expressed
LOC_Os08g02060Os.5714.1.S1_at10/118+664913..668380expressed protein
LOC_Os08g02060OsAffx.28871.1.S1_at1/118+664913..668380expressed protein
LOC_Os08g02070Os.4174.1.S1_at10/118+673011..675392Agamous-like MADS box protein AGL12, putative, expressed
LOC_Os08g02080Os.10438.1.S1_at11/118+676235..677788Rickettsia 17 kDa surface antigen family protein, expressed
LOC_Os08g02094OsAffx.5679.1.S1_at11/118+679941..687533GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os08g02094Os.52874.1.S1_at11/118+679941..687533GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os08g02094Os.48426.1.A1_at1/118+679941..687533GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os08g02110Os.52833.1.S1_at11/118+690833..692229Peroxidase 47 precursor, putative, expressed
LOC_Os08g02120Os.12780.1.S1_at11/118+694902..697658Fructokinase, putative, expressed
LOC_Os08g02130Os.6320.1.S1_at10/118+698212..707503RNA recognition motif family protein, expressed
LOC_Os08g02130Os.54405.1.S1_at2/118+698212..707503RNA recognition motif family protein, expressed
LOC_Os08g02130OsAffx.21108.1.S1_x_at1/118+698212..707503RNA recognition motif family protein, expressed
LOC_Os08g02130OsAffx.8723.1.S1_at1/118+698212..707503RNA recognition motif family protein, expressed
LOC_Os08g02140Os.10262.1.S1_at11/118+709296..713823U-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5679.1.S1_at--486--9371Chr08:681318..681340 (23 bp)
TCGACCAGATCTGCAGAAGTAGCAG
LOC_Os08g02094
OsAffx.5679.1.S1_at--988--6951Chr08:681334..681358 (25 bp)
GTAGCAGTAACATTGCAATTGCAAC
LOC_Os08g02094
OsAffx.5679.1.S1_at--282--3171Chr08:681350..681374 (25 bp)
AATTGCAACAGTTGGCATTTCCTGT
LOC_Os08g02094
OsAffx.5679.1.S1_at--976--2131Chr08:681357..681381 (25 bp)
ACAGTTGGCATTTCCTGTTTGGAGC
LOC_Os08g02094
OsAffx.5679.1.S1_at--543--1251Chr08:681359..681383 (25 bp)
AGTTGGCATTTCCTGTTTGGAGCTT
LOC_Os08g02094
OsAffx.5679.1.S1_at--1138--8491Chr08:681362..681386 (25 bp)
TGGCATTTCCTGTTTGGAGCTTGCA
LOC_Os08g02094
OsAffx.5679.1.S1_at--425--4951Chr08:681364..681388 (25 bp)
GCATTTCCTGTTTGGAGCTTGCAAA
LOC_Os08g02094
OsAffx.5679.1.S1_at--271--10291Chr08:681367..681391 (25 bp)
TTTCCTGTTTGGAGCTTGCAAAATT
LOC_Os08g02094
OsAffx.5679.1.S1_at--1054--8071Chr08:681377..681401 (25 bp)
GGAGCTTGCAAAATTTCGTGATTCA
LOC_Os08g02094
OsAffx.5679.1.S1_at--292--5151Chr08:681384..681408 (25 bp)
GCAAAATTTCGTGATTCATCTCCAG
LOC_Os08g02094
OsAffx.5679.1.S1_at--677--2451Chr08:681386..681410 (25 bp)
AAAATTTCGTGATTCATCTCCAGTA
LOC_Os08g02094
Target Sequence 
TCGACCAGATCTGCAGAAGTAGCAGTAACATTGCAATTGCAACAGTTGGCATTTCCTGTTTGGAGCTTGCAAAATTTCGT
GATTCATCTCCAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5679.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis