Browse Element(s) Details


Os.53314.1.S1_at

Description gb:AK071947.1
DB_XREF= gi:32981970
TID=Os.53314.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53314 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013088P03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013088P03, full insert sequence.
FL= gb:AK071947.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0204011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01980OsAffx.16783.2.S1_at11/118+626428..627822HCBT-like putative defense response protein, putative, expressed
LOC_Os08g01980OsAffx.16783.1.S1_x_at3/118+626428..627822HCBT-like putative defense response protein, putative, expressed
LOC_Os08g01990OsAffx.28984.1.S1_at11/118+629043..629594hypothetical protein
LOC_Os08g01990OsAffx.28984.1.S1_x_at11/118+629043..629594hypothetical protein
LOC_Os08g02000Os.7388.2.S1_x_at1/118+630355..637366expressed protein
LOC_Os08g02010OsAffx.16785.1.S1_at11/118+641886..642197hypothetical protein
LOC_Os08g02020OsAffx.16783.1.S1_x_at2/118+646310..647932HCBT-like putative defense response protein, putative
LOC_Os08g02020OsAffx.3956.1.S1_at1/118+646310..647932HCBT-like putative defense response protein, putative
LOC_Os08g02030Os.19547.1.S1_at11/118+649404..651044HCBT-like putative defense response protein, putative, expressed
LOC_Os08g02030Os.19547.1.S1_x_at11/118+649404..651044HCBT-like putative defense response protein, putative, expressed
LOC_Os08g02030OsAffx.16783.1.S1_x_at2/118+649404..651044HCBT-like putative defense response protein, putative, expressed
LOC_Os08g02040OsAffx.5678.1.S1_x_at11/118+652201..655244pentatricopeptide, putative, expressed
LOC_Os08g02040Os.53314.1.S1_at11/118+652201..655244pentatricopeptide, putative, expressed
LOC_Os08g02050Os.14853.1.S1_at10/118+655822..661212protein kinase family protein, putative, expressed
LOC_Os08g02060Os.5714.1.S1_at10/118+664913..668380expressed protein
LOC_Os08g02060OsAffx.28871.1.S1_at1/118+664913..668380expressed protein
LOC_Os08g02070Os.4174.1.S1_at10/118+673011..675392Agamous-like MADS box protein AGL12, putative, expressed
LOC_Os08g02080Os.10438.1.S1_at11/118+676235..677788Rickettsia 17 kDa surface antigen family protein, expressed
LOC_Os08g02094OsAffx.5679.1.S1_at11/118+679941..687533GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os08g02094Os.52874.1.S1_at11/118+679941..687533GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os08g02094Os.48426.1.A1_at1/118+679941..687533GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53314.1.S1_at--705--751Chr08:653041..653065 (25 bp)
ATGTGAAGGCCATGGAACTTTCCGA
LOC_Os08g02040
Os.53314.1.S1_at--52--751Chr08:652762..652786 (25 bp)
ATGTTTAGGGTCTAGCCAAGCAGTA
LOC_Os08g02040
Os.53314.1.S1_at--446--5311Chr08:652587..652611 (25 bp)
GAAGGATGTTGCGTGCGTCGCCCAA
LOC_Os08g02040
Os.53314.1.S1_at--449--1611Chr08:652547..652571 (25 bp)
AGCTGTGCTCCAACAACTAAGGCGT
LOC_Os08g02040
Os.53314.1.S1_at--149--2951Chr08:652529..652553 (25 bp)
AAGGCGTGGAGTTTGTCCATTCTGC
LOC_Os08g02040
Os.53314.1.S1_at--21--9731Chr08:652446..652470 (25 bp)
TCAATGGCTGGACTGGACTCCTTTC
LOC_Os08g02040
Os.53314.1.S1_at--838--10651Chr08:652424..652448 (25 bp)
TTCCGGTTAAGAACGCCACGGCGAT
LOC_Os08g02040
Os.53314.1.S1_at--633--591Chr08:652395..652419 (25 bp)
ATGCCATCAGAGAGCTCAGTTACCT
LOC_Os08g02040
Os.53314.1.S1_at--965--6771Chr08:652377..652401 (25 bp)
GTTACCTGATGATGCTATGCTCCGG
LOC_Os08g02040
Os.53314.1.S1_at--1054--1931Chr08:652302..652326 (25 bp)
ACGGCGTCAGCTGCAGGCTAATTAC
LOC_Os08g02040
Os.53314.1.S1_at--386--9751Chr08:652284..652308 (25 bp)
TAATTACATCCACTGCGAGCTCCAA
LOC_Os08g02040
Target Sequence 
ATGTGAAGGCCATGGAACTTTCCGAAAAGTTTCAAGAGGAGGATGTGAAAGAATTCAAAGAACAAGATAACCGAGGACAT
TATGTTTAGGGTCTAGCCAAGCAGTAGAGGCATTTGAAGAGAACTGAGGTGAAGGATGTTGCGTGCGTCGCCCAAGCAGC
ATCTCCATCTAGCTGTGCTCCAACAACTAAGGCGTGGAGTTTGTCCATTCTGCGCCACCTGGCATCGTTGCTTCGCTCTT
CATCCACGGTTGGTCTGCTCCTTCTTCCCGCTCAATGGCTGGACTGGACTCCTTTCCGGTTAAGAACGCCACGGCGATGA
ACATGCCATCAGAGAGCTCAGTTACCTGATGATGCTATGCTCCGGCCGCGCTGGAGAAGCTCCTCTCCGACGAGGAGTTC
ATGGACGCGGTGACCACGGCGTCAGCTGCAGGCTAATTACATCCACTGCGAGCTCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53314.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis