Browse Element(s) Details


OsAffx.16785.1.S1_at

Description tigr:9636.m00101
TID=OsAffx.16785.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0201011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01980OsAffx.16783.2.S1_at11/118+626428..627822HCBT-like putative defense response protein, putative, expressed
LOC_Os08g01980OsAffx.16783.1.S1_x_at3/118+626428..627822HCBT-like putative defense response protein, putative, expressed
LOC_Os08g01990OsAffx.28984.1.S1_at11/118+629043..629594hypothetical protein
LOC_Os08g01990OsAffx.28984.1.S1_x_at11/118+629043..629594hypothetical protein
LOC_Os08g02000Os.7388.2.S1_x_at1/118+630355..637366expressed protein
LOC_Os08g02010OsAffx.16785.1.S1_at11/118+641886..642197hypothetical protein
LOC_Os08g02020OsAffx.16783.1.S1_x_at2/118+646310..647932HCBT-like putative defense response protein, putative
LOC_Os08g02020OsAffx.3956.1.S1_at1/118+646310..647932HCBT-like putative defense response protein, putative
LOC_Os08g02030Os.19547.1.S1_at11/118+649404..651044HCBT-like putative defense response protein, putative, expressed
LOC_Os08g02030Os.19547.1.S1_x_at11/118+649404..651044HCBT-like putative defense response protein, putative, expressed
LOC_Os08g02030OsAffx.16783.1.S1_x_at2/118+649404..651044HCBT-like putative defense response protein, putative, expressed
LOC_Os08g02040OsAffx.5678.1.S1_x_at11/118+652201..655244pentatricopeptide, putative, expressed
LOC_Os08g02040Os.53314.1.S1_at11/118+652201..655244pentatricopeptide, putative, expressed
LOC_Os08g02050Os.14853.1.S1_at10/118+655822..661212protein kinase family protein, putative, expressed
LOC_Os08g02060Os.5714.1.S1_at10/118+664913..668380expressed protein
LOC_Os08g02060OsAffx.28871.1.S1_at1/118+664913..668380expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16785.1.S1_at--117--9171Chr08:641980..642160 (25 bp)
TGCCGGCCGAGAGAAACTCATGCCT
LOC_Os08g02010
OsAffx.16785.1.S1_at--128--4491Chr08:641979..642159 (25 bp)
GCCGGCCGAGAGAAACTCATGCCTT
LOC_Os08g02010
OsAffx.16785.1.S1_at--1045--8411Chr08:641976..642156 (25 bp)
GGCCGAGAGAAACTCATGCCTTAGC
LOC_Os08g02010
OsAffx.16785.1.S1_at--1139--4051Chr08:641973..642153 (25 bp)
CGAGAGAAACTCATGCCTTAGCGAA
LOC_Os08g02010
OsAffx.16785.1.S1_at--714--1351Chr08:641971..642151 (25 bp)
AGAGAAACTCATGCCTTAGCGAAGC
LOC_Os08g02010
OsAffx.16785.1.S1_at--104--5551Chr08:641968..641988 (21 bp)
GAAACTCATGCCTTAGCGAAGCTGA
LOC_Os08g02010
OsAffx.16785.1.S1_at--466--2391Chr08:641967..641988 (22 bp)
AAACTCATGCCTTAGCGAAGCTGAT
LOC_Os08g02010
OsAffx.16785.1.S1_at--165--1991Chr08:641965..641988 (24 bp)
ACTCATGCCTTAGCGAAGCTGATGA
LOC_Os08g02010
OsAffx.16785.1.S1_at--956--9611Chr08:641963..641987 (25 bp)
TCATGCCTTAGCGAAGCTGATGACA
LOC_Os08g02010
OsAffx.16785.1.S1_at--650--591Chr08:641961..641985 (25 bp)
ATGCCTTAGCGAAGCTGATGACAGG
LOC_Os08g02010
OsAffx.16785.1.S1_at--149--4311Chr08:641958..641982 (25 bp)
CCTTAGCGAAGCTGATGACAGGCTG
LOC_Os08g02010
Target Sequence 
TGCCGGCCGAGAGAAACTCATGCCTTAGCGAAGCTGATGACAGGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16785.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis