Browse Element(s) Details


OsAffx.5678.1.S1_x_at

Description tigr:9636.m00104
TID=OsAffx.5678.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0204011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01980OsAffx.16783.2.S1_at11/118+626428..627822HCBT-like putative defense response protein, putative, expressed
LOC_Os08g01980OsAffx.16783.1.S1_x_at3/118+626428..627822HCBT-like putative defense response protein, putative, expressed
LOC_Os08g01990OsAffx.28984.1.S1_at11/118+629043..629594hypothetical protein
LOC_Os08g01990OsAffx.28984.1.S1_x_at11/118+629043..629594hypothetical protein
LOC_Os08g02000Os.7388.2.S1_x_at1/118+630355..637366expressed protein
LOC_Os08g02010OsAffx.16785.1.S1_at11/118+641886..642197hypothetical protein
LOC_Os08g02020OsAffx.16783.1.S1_x_at2/118+646310..647932HCBT-like putative defense response protein, putative
LOC_Os08g02020OsAffx.3956.1.S1_at1/118+646310..647932HCBT-like putative defense response protein, putative
LOC_Os08g02030Os.19547.1.S1_at11/118+649404..651044HCBT-like putative defense response protein, putative, expressed
LOC_Os08g02030Os.19547.1.S1_x_at11/118+649404..651044HCBT-like putative defense response protein, putative, expressed
LOC_Os08g02030OsAffx.16783.1.S1_x_at2/118+649404..651044HCBT-like putative defense response protein, putative, expressed
LOC_Os08g02040OsAffx.5678.1.S1_x_at11/118+652201..655244pentatricopeptide, putative, expressed
LOC_Os08g02040Os.53314.1.S1_at11/118+652201..655244pentatricopeptide, putative, expressed
LOC_Os08g02050Os.14853.1.S1_at10/118+655822..661212protein kinase family protein, putative, expressed
LOC_Os08g02060Os.5714.1.S1_at10/118+664913..668380expressed protein
LOC_Os08g02060OsAffx.28871.1.S1_at1/118+664913..668380expressed protein
LOC_Os08g02070Os.4174.1.S1_at10/118+673011..675392Agamous-like MADS box protein AGL12, putative, expressed
LOC_Os08g02080Os.10438.1.S1_at11/118+676235..677788Rickettsia 17 kDa surface antigen family protein, expressed
LOC_Os08g02094OsAffx.5679.1.S1_at11/118+679941..687533GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os08g02094Os.52874.1.S1_at11/118+679941..687533GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os08g02094Os.48426.1.A1_at1/118+679941..687533GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5678.1.S1_x_at--658--1371Chr08:653664..653688 (25 bp)
AGAGCCGGACCATGTAACTTTCGTT
LOC_Os08g02040
OsAffx.5678.1.S1_x_at--843--5031Chr08:653639..653663 (25 bp)
GCAGTTCTATCAGCATGTAGCCACT
LOC_Os08g02040
OsAffx.5678.1.S1_x_at--1063--4391Chr08:653620..653644 (25 bp)
GCCACTCTGGGCTAGTAACTCAGGG
LOC_Os08g02040
OsAffx.5678.1.S1_x_at--654--3491Chr08:653529..653553 (25 bp)
CATGGTTGATTTGTACTGCCGTGAA
LOC_Os08g02040
OsAffx.5678.1.S1_x_at--1098--6991Chr08:653517..653541 (25 bp)
GTACTGCCGTGAAGGTTTGCTCAAG
LOC_Os08g02040
OsAffx.5678.1.S1_x_at--285--2811Chr08:653471..653495 (25 bp)
AAGATGCCATTTCAACCAACTGCTG
LOC_Os08g02040
OsAffx.5678.1.S1_x_at--30--8891Chr08:653427..653451 (25 bp)
TGAGGCTTGCCGAATCCATGGTAAT
LOC_Os08g02040
OsAffx.5678.1.S1_x_at--246--6051Chr08:653280..653304 (25 bp)
GAGATCACTAATGAGCACCCTGGAG
LOC_Os08g02040
OsAffx.5678.1.S1_x_at--213--4311Chr08:653243..653267 (25 bp)
CCTAGTCATTCTTTGCTGGAGTCAG
LOC_Os08g02040
OsAffx.5678.1.S1_x_at--176--271Chr08:653217..653241 (25 bp)
ATATGACGTGTGTCCAGTCGAGCAA
LOC_Os08g02040
OsAffx.5678.1.S1_x_at--792--9471Chr08:653156..653180 (25 bp)
TCTGACCACCTGACTGATACTGATT
LOC_Os08g02040
Target Sequence 
AGAGCCGGACCATGTAACTTTCGTTGCAGTTCTATCAGCATGTAGCCACTCTGGGCTAGTAACTCAGGGGCAGCTACTAT
TTGCCAAGATGGTTTCTATATTTGGTATTGCACCAAGAGTGGAGCATTTTTCTTGCATGGTTGATTTGTACTGCCGTGAA
GGTTTGCTCAAGATGGCTGAGGTGATAATTGACAAGATGCCATTTCAACCAACTGCTGCAATGTTAGCAACTCTTATTGA
GGCTTGCCGAATCCATGGTAATACGGAAATCGGGGATCGGGCTGCAAAGAAGTTGCTGGCTATGAGGACAAACAACCCTG
GTCATTACAGATTGATTGCAAACATGTATATAGCAGCAAAATGCTGGCCAGAACTAGCTAAAGTGAGATCACTAATGAGC
ACCCTGGAGCTAAATATGATTCCTAGTCATTCTTTGCTGGAGTCAGAATATGACGTGTGTCCAGTCGAGCAAGATAATTT
CCTGAATCATGTCACATATGGTTTGTCATCTGACCACCTGACTGATACTGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5678.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis