Browse Element(s) Details


OsAffx.3956.1.S1_at

Description tigr:9632.m02902
TID=OsAffx.3956.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=anthocyanin 5-aromatic acyltransferase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3060011/11HCBT-like putative defense response protein, putative
LOC_Os08g020201/11HCBT-like putative defense response protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g30530NANA4+18060058..18063002NB-ARC domain containing protein, expressed
LOC_Os04g30540OsAffx.14050.1.S1_at11/114+18063778..18064869Leucine Rich Repeat family protein
LOC_Os04g30550OsAffx.3955.1.S1_at11/114+18067132..18067888GDP-mannose 4,6 dehydratase 1, putative
LOC_Os04g30560OsAffx.26256.1.S1_at11/114+18068110..18068565hypothetical protein
LOC_Os04g30570OsAffx.16783.1.S1_x_at11/114+18070685..18072098HCBT-like putative defense response protein, putative
LOC_Os04g30580NANA4+18073642..18076973transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g30590Os.14491.2.S1_x_at4/114+18079526..18083223transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g30590Os.47463.1.S1_x_at3/114+18079526..18083223transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g30600OsAffx.3956.1.S1_at11/114+18086346..18086837HCBT-like putative defense response protein, putative
LOC_Os04g30610OsAffx.26258.3.S1_at11/114+18091907..18094112NB-ARC domain containing protein
LOC_Os04g30620Os.49553.1.S1_at4/114+18099671..18103286retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g30620OsAffx.20387.1.S1_x_at1/114+18099671..18103286retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g30630OsAffx.15079.1.S1_at1/114+18105041..18109712retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g30640NANA4+18111091..18111381retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3956.1.S1_at--1096--4691Chr04:18086770..18086794 (25 bp)
GCGGCGTGTCGCTTCAAGACTCTAG
LOC_Os04g30600
OsAffx.3956.1.S1_at--132--7451Chr04:18086765..18086789 (25 bp)
GTGTCGCTTCAAGACTCTAGCAGAA
LOC_Os04g30600
OsAffx.3956.1.S1_at--830--5691Chr04:18086753..18086777 (25 bp)
GACTCTAGCAGAAAGTACCGCAGTA
LOC_Os04g30600
OsAffx.3956.1.S1_at--179--2331Chr04:18086742..18086766 (25 bp)
AAAGTACCGCAGTAGCTGCTGTCGG
LOC_Os04g30600
OsAffx.3956.1.S1_at--814--1791Chr04:18086737..18086761 (25 bp)
ACCGCAGTAGCTGCTGTCGGCCGAA
LOC_Os04g30600
OsAffx.3956.1.S1_at--154--8391Chr04:18086633..18086657 (25 bp)
TGGTCTAGGGTTACACAAAACAAGC
LOC_Os04g30600
OsAffx.3956.1.S1_at--453--6771Chr04:18086624..18086648 (25 bp)
GTTACACAAAACAAGCCCAATGGCC
LOC_Os04g30600
OsAffx.3956.1.S1_at--93--4671Chr04:18086598..18086622 (25 bp)
GCGGGCACTGGAGTTCGCCAACTTC
LOC_Os04g30600
OsAffx.3956.1.S1_at--1151--6052Chr08:646808..646828 (21 bp)
GAGTTCGCCAACTTCGCGAAGCCAA
LOC_Os08g02020
OsAffx.3956.1.S1_at--1078--9331Chr04:18086575..18086599 (25 bp)
TCGCGAAGCCAATGGGAGGCACCGC
LOC_Os04g30600
OsAffx.3956.1.S1_at--445--4671Chr04:18086470..18086494 (25 bp)
GCGGCACGGACAAGTTCGACGGTAA
LOC_Os04g30600
Target Sequence 
GCGGCGTGTCGCTTCAAGACTCTAGCAGAAAGTACCGCAGTAGCTGCTGTCGGCCGAAGGGGATTGAGGATTGGGGAGGG
GGATTGCTGGATTGGGTGTTGGGGGAATCGATGGAGGTGGATGAGATGGGGAAATTTTGGTCTAGGGTTACACAAAACAA
GCCCAATGGCCCGCGGGCACTGGAGTTCGCCAACTTCGCGAAGCCAATGGGAGGCACCGCCATCAACACGGGGAGCTCGC
CACGGTTCGACGTGTTCGGCAAAGACTTCGGGTGGGGGAGGCCGGCGACCGTGCGGAGCGGCGGCACGGACAAGTTCGAC
GGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3956.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis