Browse Element(s) Details


Os.49553.1.S1_at

Description gb:AK101769.1
DB_XREF= gi:32986978
TID=Os.49553.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49553 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033064H15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033064H15, full insert sequence.
FL= gb:AK101769.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3072010/11Kinesin motor domain containing protein, expressed
LOC_Os04g306204/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g30680OsAffx.26257.1.S1_at11/114+18151090..18151467hypothetical protein
LOC_Os04g30680OsAffx.6583.1.S1_at1/114+18151090..18151467hypothetical protein
LOC_Os04g30690OsAffx.26258.2.S1_at11/114+18153480..18157126NB-ARC domain containing protein
LOC_Os04g30700NANA4+18166293..18169244hypothetical protein
LOC_Os04g30710Os.2741.4.S1_x_at6/114+18169767..18171331hypothetical protein
LOC_Os04g30720Os.49553.1.S1_at10/114+18173878..18178813Kinesin motor domain containing protein, expressed
LOC_Os04g30730Os.12817.1.S1_at10/114+18181823..1818374460S ribosomal protein L35, putative, expressed
LOC_Os04g30740Os.54218.1.S1_at11/114+18184245..18188169Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os04g30750OsAffx.14053.1.S1_at11/114+18190528..18192911expressed protein
LOC_Os04g30760Os.22815.1.S1_at11/114+18195311..182002503-oxoacyl-reductase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010091biological_processtrichome branching (sensu Magnoliophyta)
GO:0003777molecular_functionmicrotubule motor activity
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49553.1.S1_at--679--3072Chr04:18175006..18175030 (25 bp)
AATCAACACGATTGCACCAGAGCCA
LOC_Os04g30720
Os.49553.1.S1_at--599--2911Chr04:18174936..18174960 (25 bp)
AAGGATAAACTTACGGCCCGCAGCA
LOC_Os04g30720
Os.49553.1.S1_at--732--6112Chr04:18174773..18174797 (25 bp)
GAGTGCTTGACTTTTCTCAACAGTG
LOC_Os04g30720
Os.49553.1.S1_at--326--2533Chr04:18174545..18174569 (25 bp)
AACTACATACTTGAGCTTCGTGAGG
LOC_Os04g30720
Os.49553.1.S1_at--595--7393Chr04:18174526..18174550 (25 bp)
GTGAGGAGTCACCAGAGCTATTTAA
LOC_Os04g30720
Os.49553.1.S1_at--1058--6251Chr04:18174133..18174157 (25 bp)
GATGTCCGGGATTATCGACCCCTAA
LOC_Os04g30720
Os.49553.1.S1_at--710--9491Chr04:18174081..18174105 (25 bp)
TCTCCTGTGGAGTGTGCATATGCAT
LOC_Os04g30720
Os.49553.1.S1_at--346--8711Chr04:18174015..18174039 (25 bp)
TGTCCAGTTGCTTCTCAAGAGCGAA
LOC_Os04g30720
Os.49553.1.S1_at--336--413Chr04:18173957..18173981 (25 bp)
ATCAGTGCTTTGCAGTGGTTTGCTG
LOC_Os04g30720
Os.49553.1.S1_at--589--7873Chr04:18173941..18173965 (25 bp)
GGTTTGCTGCTATTATGTGTTCTTT
LOC_Os04g30720
Os.49553.1.S1_at--208--7552Chr04:18173878..18173902 (25 bp)
GTGGCGTTAATGTGATTTCCTCTCT
NONE
Target Sequence 
AATCAACACGATTGCACCAGAGCCAAAAACTCCTGAAGTGCATTTGAAATTTGAGCAAGCAGAAGATCCCAAGGATAAAC
TTACGGCCCGCAGCACTGGGATTAAGAAATCTCTAGCTCAAGAGTGCTTGACTTTTCTCAACAGTGCTAATAAGGAGCAA
TTAAAAAGCTTAAAGGGAATCGGAGATAAAAGGGCAAACTACATACTTGAGCTTCGTGAGGAGTCACCAGAGCTATTTAA
AGAGATAAGTGATGTGAGAGACATCATCGGAATGAATTCAAAAGAGATCAAAAAGATGATGTCCGGGATTATCGACCCCT
AAGAAAGTGAGCAATGGGAGTGCGATGGTTCTCCTGTGGAGTGTGCATATGCATCTTTGGTCAAAGGTGTCATGTCTTTG
TTTTGTATTTTTTTTTGTCCAGTTGCTTCTCAAGAGCGAATGCTTTGGTCAGGAGTTGGCATTCTGTGAGAGAATCAGTG
CTTTGCAGTGGTTTGCTGCTATTATGTGTTCTTTGTAATCATCATACAGTGTCGTACCAATATTGATAATGTGTGGCGTT
AATGTGATTTCCTCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49553.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis