Browse Element(s) Details


OsAffx.14053.1.S1_at

Description tigr:9632.m02917
TID=OsAffx.14053.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3075011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g30700NANA4+18166293..18169244hypothetical protein
LOC_Os04g30710Os.2741.4.S1_x_at6/114+18169767..18171331hypothetical protein
LOC_Os04g30720Os.49553.1.S1_at10/114+18173878..18178813Kinesin motor domain containing protein, expressed
LOC_Os04g30730Os.12817.1.S1_at10/114+18181823..1818374460S ribosomal protein L35, putative, expressed
LOC_Os04g30740Os.54218.1.S1_at11/114+18184245..18188169Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os04g30750OsAffx.14053.1.S1_at11/114+18190528..18192911expressed protein
LOC_Os04g30760Os.22815.1.S1_at11/114+18195311..182002503-oxoacyl-reductase, chloroplast precursor, putative, expressed
LOC_Os04g30770OsAffx.14054.1.S1_at11/114+18205252..18206991Glycosyl hydrolases family 18 protein, expressed
LOC_Os04g30780Os.8580.1.S1_at11/114+18213820..18218312Mov34/MPN/PAD-1 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14053.1.S1_at--506--9671Chr04:18192406..18192430 (25 bp)
TCACCGGGCCGAAGCGGTGGATCCT
LOC_Os04g30750
OsAffx.14053.1.S1_at--264--4691Chr04:18192689..18192713 (25 bp)
GCGGCATACGCGGTTCCTGAGGTAC
LOC_Os04g30750
OsAffx.14053.1.S1_at--548--9971Chr04:18192711..18192735 (25 bp)
TACCTGGTGCGGGTGTGCGCGACAT
LOC_Os04g30750
OsAffx.14053.1.S1_at--519--2071Chr04:18192732..18192756 (25 bp)
ACATTGGAGCGCGTGGTGCTCGTCC
LOC_Os04g30750
OsAffx.14053.1.S1_at--1002--8511Chr04:18192792..18192816 (25 bp)
TGGAACACGGTGAGCAATGGCGATC
LOC_Os04g30750
OsAffx.14053.1.S1_at--801--2171Chr04:18192796..18192820 (25 bp)
ACACGGTGAGCAATGGCGATCGGCC
LOC_Os04g30750
OsAffx.14053.1.S1_at--219--911Chr04:18192825..18192849 (25 bp)
AGGCTGGACGATTGGATCTCGGTCA
LOC_Os04g30750
OsAffx.14053.1.S1_at--149--6611Chr04:18192834..18192858 (25 bp)
GATTGGATCTCGGTCAGTGCGCAGA
LOC_Os04g30750
OsAffx.14053.1.S1_at--291--7971Chr04:18192838..18192862 (25 bp)
GGATCTCGGTCAGTGCGCAGATTAA
LOC_Os04g30750
OsAffx.14053.1.S1_at--998--7111Chr04:18192846..18192870 (25 bp)
GTCAGTGCGCAGATTAAGCATGGTA
LOC_Os04g30750
OsAffx.14053.1.S1_at--181--6551Chr04:18192857..18192881 (25 bp)
GATTAAGCATGGTAGAACTTGGTCG
LOC_Os04g30750
Target Sequence 
TCACCGGGCCGAAGCGGTGGATCCTCCCGCGCCCGCTCGGCGCCGCGCTGCTCGGCCTGAGGGAGCTCCTCGTCGCCGAC
GTGCCGCCCACCTGGGACGTCTCGTGGCCGCGCCTCCTCCTCGAGGCGGCGCCGGCGCTCGAGTCGCTGCACATCCACGT
CTCCGCGCCCGCCCCCTCGCCGGACGAACACCTGGGGCGGCCGATCTACTGGCAGCCGCGGCGCAAGTTCCGGCACCGGC
GGCTGAGGGAGGTGCGCATGGTGGGGTTCGCGGCGAGCGCGCCGCGGCATACGCGGTTCCTGAGGTACCTGGTGCGGGTG
TGCGCGACATTGGAGCGCGTGGTGCTCGTCCGGGACGGGCGCGTCGAGGAAGACGGGCTCTGGGGGTGGAACACGGTGAG
CAATGGCGATCGGCCGTGGAGGCTGGACGATTGGATCTCGGTCAGTGCGCAGATTAAGCATGGTAGAACTTGGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14053.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis