Browse Element(s) Details


Os.54218.1.S1_at

Description gb:AK102582.1
DB_XREF= gi:32987791
TID=Os.54218.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54218 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033098C18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033098C18, full insert sequence.
FL= gb:AK102582.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3074011/11Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g30700NANA4+18166293..18169244hypothetical protein
LOC_Os04g30710Os.2741.4.S1_x_at6/114+18169767..18171331hypothetical protein
LOC_Os04g30720Os.49553.1.S1_at10/114+18173878..18178813Kinesin motor domain containing protein, expressed
LOC_Os04g30730Os.12817.1.S1_at10/114+18181823..1818374460S ribosomal protein L35, putative, expressed
LOC_Os04g30740Os.54218.1.S1_at11/114+18184245..18188169Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os04g30750OsAffx.14053.1.S1_at11/114+18190528..18192911expressed protein
LOC_Os04g30760Os.22815.1.S1_at11/114+18195311..182002503-oxoacyl-reductase, chloroplast precursor, putative, expressed
LOC_Os04g30770OsAffx.14054.1.S1_at11/114+18205252..18206991Glycosyl hydrolases family 18 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015031biological_processprotein transport
GO:0005744cellular_componentmitochondrial inner membrane presequence translocase complex
GO:0015450molecular_functionprotein translocase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54218.1.S1_at--1082--4851Chr04:18186266..18186290 (25 bp)
GCTAGCAAGCGGAGCTGTTCTTGGT
LOC_Os04g30740
Os.54218.1.S1_at--768--10131Chr04:18184741..18184765 (25 bp)
TATGCAGTTACCTTTGCAGCTGCTG
LOC_Os04g30740
Os.54218.1.S1_at--828--7831Chr04:18184717..18184741 (25 bp)
GGTACCGCATTGGACTATGCTGCAC
LOC_Os04g30740
Os.54218.1.S1_at--68--3851Chr04:18184698..18184722 (25 bp)
CTGCACTGAAGCTGAGTCCTCAAAT
LOC_Os04g30740
Os.54218.1.S1_at--385--8491Chr04:18184663..18184687 (25 bp)
TGGCATGCCCTGAAAGAACATTTTT
LOC_Os04g30740
Os.54218.1.S1_at--690--5611Chr04:18184633..18184657 (25 bp)
GACAAAGACTGGTTTACGCTCCCCG
LOC_Os04g30740
Os.54218.1.S1_at--563--4211Chr04:18184611..18184635 (25 bp)
CCGAATGGTCGCCTATTCAGGTGTT
LOC_Os04g30740
Os.54218.1.S1_at--943--2771Chr04:18184551..18184575 (25 bp)
AAGAGAAGTTGTTCGCTCAGCGAGC
LOC_Os04g30740
Os.54218.1.S1_at--362--4831Chr04:18184537..18184561 (25 bp)
GCTCAGCGAGCTCTCAGTAAACTTA
LOC_Os04g30740
Os.54218.1.S1_at--652--6791Chr04:18184375..18184399 (25 bp)
GTTATCCTTTGTAAGCTTTTCACGG
LOC_Os04g30740
Os.54218.1.S1_at--539--2511Chr04:18184296..18184320 (25 bp)
AACATTTGCTTGTCTGCTGTGGTGT
LOC_Os04g30740
Target Sequence 
GCTAGCAAGCGGAGCTGTTCTTGGTCGATTACAAGGCGGACACTTTGGGGCAGTTAAGTATGCAGTTACCTTTGCAGCTG
CTGGTACCGCATTGGACTATGCTGCACTGAAGCTGAGTCCTCAAATTAATGGCAAATGGCATGCCCTGAAAGAACATTTT
TCTGGAGACAAAGACTGGTTTACGCTCCCCGAATGGTCGCCTATTCAGGTGTTGGATGAGGAGGCCTTGGCGAAGAAACG
AGCTCGAGAAGAGAAGTTGTTCGCTCAGCGAGCTCTCAGTAAACTTAGCAAGGAGGAACCATAGTTACAGTGCTACAGTA
CTGCTATAGACTTGATAGTTTTGTCAAGGCGCTATGCGTCACGTAAACCATTATAGTTCTAGACTGTTAGAACATTCAAA
TTTTGGAGTTTTTTTTATCTTTTCGTTATCCTTTGTAAGCTTTTCACGGAAAGGGAGAAACCATGTTGGTCATTGTTGTA
CTGGAAAGGGTTTTAGCTTCCAAAACATTTGCTTGTCTGCTGTGGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54218.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis