Browse Element(s) Details


Os.12817.1.S1_at

Description gb:AK064842.1
DB_XREF= gi:32974860
TID=Os.12817.1
CNT=30
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12817 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000G06, full insert sequence.
FL= gb:AK064842.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3073010/1160S ribosomal protein L35, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g30690OsAffx.26258.2.S1_at11/114+18153480..18157126NB-ARC domain containing protein
LOC_Os04g30700NANA4+18166293..18169244hypothetical protein
LOC_Os04g30710Os.2741.4.S1_x_at6/114+18169767..18171331hypothetical protein
LOC_Os04g30720Os.49553.1.S1_at10/114+18173878..18178813Kinesin motor domain containing protein, expressed
LOC_Os04g30730Os.12817.1.S1_at10/114+18181823..1818374460S ribosomal protein L35, putative, expressed
LOC_Os04g30740Os.54218.1.S1_at11/114+18184245..18188169Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os04g30750OsAffx.14053.1.S1_at11/114+18190528..18192911expressed protein
LOC_Os04g30760Os.22815.1.S1_at11/114+18195311..182002503-oxoacyl-reductase, chloroplast precursor, putative, expressed
LOC_Os04g30770OsAffx.14054.1.S1_at11/114+18205252..18206991Glycosyl hydrolases family 18 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12817.1.S1_at--1138--2711NONE
AAGCACCAGCTCTCTTTGAAGACCG
NONE
Os.12817.1.S1_at--458--5491Chr04:18182080..18182104 (25 bp)
GAACATAAATGTTTTACCGGTCAAG
LOC_Os04g30730
Os.12817.1.S1_at--779--10451Chr04:18182067..18182091 (25 bp)
TTACCGGTCAAGTTTTGCCCAGTTG
LOC_Os04g30730
Os.12817.1.S1_at--310--9732Chr04:18182060..18182084 (25 bp)
TCAAGTTTTGCCCAGTTGCCTAAAT
LOC_Os04g30730
Os.12817.1.S1_at--3--9171Chr04:18182052..18182076 (25 bp)
TGCCCAGTTGCCTAAATTTGATGTT
LOC_Os04g30730
Os.12817.1.S1_at--1043--10831Chr04:18182027..18182051 (25 bp)
TTGTGTGGACATCCATTGTCACCTT
LOC_Os04g30730
Os.12817.1.S1_at--787--5651Chr04:18182020..18182044 (25 bp)
GACATCCATTGTCACCTTAGTACAA
LOC_Os04g30730
Os.12817.1.S1_at--842--7031Chr04:18182001..18182025 (25 bp)
GTACAATGTATTTGGTCTACTGCAT
LOC_Os04g30730
Os.12817.1.S1_at--511--9911Chr04:18181984..18182008 (25 bp)
TACTGCATGAAGTGCGTACTATTTT
LOC_Os04g30730
Os.12817.1.S1_at--989--6791Chr04:18181946..18181970 (25 bp)
GTTATTTGGTTATAGCTGCCTGTCA
LOC_Os04g30730
Os.12817.1.S1_at--871--7871Chr04:18181939..18181963 (25 bp)
GGTTATAGCTGCCTGTCACCTGTCT
LOC_Os04g30730
Target Sequence 
AAGCACCAGCTCTCTTTGAAGACCGAGAGGGAGAAGAAGCGTGAGAAGTATTTCCCCATGAGGAAGTATGCTGTTAAAGC
TTAGGTTATTAGGAACATAAATGTTTTACCGGTCAAGTTTTGCCCAGTTGCCTAAATTTGATGTTTTGTGTGGACATCCA
TTGTCACCTTAGTACAATGTATTTGGTCTACTGCATGAAGTGCGTACTATTTTNGCCTTTTAACGTTGTTATTTGGTTAT
AGCTGCCTGTCACCTGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12817.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis