Browse Element(s) Details


OsAffx.26258.2.S1_at

Description tigr:9632.m02911
TID=OsAffx.26258.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3069011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g30660OsAffx.26258.1.S1_at11/114+18131253..18135073NB-ARC domain containing protein, expressed
LOC_Os04g30670OsAffx.3958.1.S1_at10/114+18140203..18141790hypothetical protein
LOC_Os04g30680OsAffx.26257.1.S1_at11/114+18151090..18151467hypothetical protein
LOC_Os04g30680OsAffx.6583.1.S1_at1/114+18151090..18151467hypothetical protein
LOC_Os04g30690OsAffx.26258.2.S1_at11/114+18153480..18157126NB-ARC domain containing protein
LOC_Os04g30700NANA4+18166293..18169244hypothetical protein
LOC_Os04g30710Os.2741.4.S1_x_at6/114+18169767..18171331hypothetical protein
LOC_Os04g30720Os.49553.1.S1_at10/114+18173878..18178813Kinesin motor domain containing protein, expressed
LOC_Os04g30730Os.12817.1.S1_at10/114+18181823..1818374460S ribosomal protein L35, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26258.2.S1_at--32--3111Chr04:18155729..18156160 (25 bp)
AATAGTGTCTTACCTAGGCGTGTCT
LOC_Os04g30690
OsAffx.26258.2.S1_at--1033--9971Chr04:18156150..18156170 (21 bp)
TACCTAGGCGTGTCTGAGGCAAGCA
LOC_Os04g30690
OsAffx.26258.2.S1_at--871--651Chr04:18156218..18156242 (25 bp)
ATGAATTGCGATGCACTGTTGAGTC
LOC_Os04g30690
OsAffx.26258.2.S1_at--70--6631Chr04:18156300..18156324 (25 bp)
GTTGTGAACAATTGGCATTAGTGCC
LOC_Os04g30690
OsAffx.26258.2.S1_at--1113--3811Chr04:18156335..18156359 (25 bp)
CTCCACCGTTTTTCTCACTTGGAGG
LOC_Os04g30690
OsAffx.26258.2.S1_at--1082--6411Chr04:18156359..18156383 (25 bp)
GATCTATGTATTGCATACTGTCCCA
LOC_Os04g30690
OsAffx.26258.2.S1_at--751--9551Chr04:18156421..18156445 (25 bp)
TCTTCAGATGCTCAGTTTAGCCCGT
LOC_Os04g30690
OsAffx.26258.2.S1_at--1006--6811Chr04:18156435..18156459 (25 bp)
GTTTAGCCCGTTGTCCAAGCATAAA
LOC_Os04g30690
OsAffx.26258.2.S1_at--1045--6471Chr04:18156514..18156538 (25 bp)
GATACTTATTAGGTGTCCAGACCTC
LOC_Os04g30690
OsAffx.26258.2.S1_at--386--10331Chr04:18156625..18156649 (25 bp)
TTTCAATTACAAGAGGCCACGACTG
LOC_Os04g30690
OsAffx.26258.2.S1_at--29--8451Chr04:18156639..18157092 (25 bp)
GGCCACGACTGATCATTGGCGATGT
LOC_Os04g30690
Target Sequence 
AATAGTGTCTTACCTAGGCGTGTCTGAGGCAAGCAGCAGGCACACTGTTGGAGTATTTTCATCCCTTTCAAATGTCATCA
TTATGAATTGCGATGCACTGTTGAGTCTTGATGAGTTTCTTATGCCTGCTTATATGCCTGTCGTGAAGACCATTCATGTG
AAACGTTGTGAACAATTGGCATTAGTGCCAGTTGATGAGCTCCACCGTTTTTCTCACTTGGAGGATCTATGTATTGCATA
CTGTCCCAAGTTGAATATGCAGAGGAGAATGACATTACCATCCTCTCTTCAGATGCTCAGTTTAGCCCGTTGTCCAAGCA
TAAAGTATATCGACAACAGCCATCTGGGGAGTTCTATGACACTGAAGGGACTCAACCTGATACTTATTAGGTGTCCAGAC
CTCATCTCTATTCTTGGTGCTATATCTGTCTCTGAAATAGAGTCGGGTTATATAGATGGTTGCCCCAAGCTGATGGAGAT
AAAACAGCCTTTCAATTACAAGAGGCCACGACTGATCATTGGCGATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26258.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis