Browse Element(s) Details


OsAffx.26258.1.S1_at

Description tigr:9632.m02908
TID=OsAffx.26258.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3066011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g30630OsAffx.15079.1.S1_at1/114+18105041..18109712retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g30640NANA4+18111091..18111381retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g30650Os.46012.2.S1_x_at5/114+18117513..18123196retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g30650Os.27088.1.A1_x_at4/114+18117513..18123196retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g30650Os.46012.3.S1_x_at3/114+18117513..18123196retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g30650Os.46012.3.S1_at2/114+18117513..18123196retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g30660OsAffx.26258.1.S1_at11/114+18131253..18135073NB-ARC domain containing protein, expressed
LOC_Os04g30670OsAffx.3958.1.S1_at10/114+18140203..18141790hypothetical protein
LOC_Os04g30680OsAffx.26257.1.S1_at11/114+18151090..18151467hypothetical protein
LOC_Os04g30680OsAffx.6583.1.S1_at1/114+18151090..18151467hypothetical protein
LOC_Os04g30690OsAffx.26258.2.S1_at11/114+18153480..18157126NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26258.1.S1_at--34--4651Chr04:18133892..18133916 (25 bp)
GCGTATTGATAATTGTGGCTCCCTC
LOC_Os04g30660
OsAffx.26258.1.S1_at--620--4331Chr04:18133921..18133945 (25 bp)
CCATCTGTGTCTCTGAGGCAAGCAA
LOC_Os04g30660
OsAffx.26258.1.S1_at--568--2491Chr04:18133979..18134003 (25 bp)
AACAGTCACCATTTCGTTTTGCAAT
LOC_Os04g30660
OsAffx.26258.1.S1_at--1107--7131Chr04:18134014..18134038 (25 bp)
GTCTTGATGAGTTCTTTATGCCCGC
LOC_Os04g30660
OsAffx.26258.1.S1_at--309--10351Chr04:18134028..18134052 (25 bp)
TTTATGCCCGCTTATATGCCTTTCG
LOC_Os04g30660
OsAffx.26258.1.S1_at--506--9191Chr04:18134110..18134134 (25 bp)
TCCACCTTTTTTCTCGCTTGGAGAA
LOC_Os04g30660
OsAffx.26258.1.S1_at--1060--6331Chr04:18134201..18134225 (25 bp)
GATGCTCAGCTTATTACTTTGTCCA
LOC_Os04g30660
OsAffx.26258.1.S1_at--948--1671Chr04:18134247..18134271 (25 bp)
AGCCATCTGGCGAGTGCAATGAAAC
LOC_Os04g30660
OsAffx.26258.1.S1_at--33--1071Chr04:18134275..18134299 (25 bp)
AGGGACTTAGCCTTCAACTTATGAG
LOC_Os04g30660
OsAffx.26258.1.S1_at--709--7171Chr04:18134356..18134380 (25 bp)
GTCGTATAGAAGATTGCCCCAAGCT
LOC_Os04g30660
OsAffx.26258.1.S1_at--1005--1111Chr04:18135019..18135043 (25 bp)
AGTGCAGCCTGATCAGACCATGGGT
LOC_Os04g30660
Target Sequence 
GCGTATTGATAATTGTGGCTCCCTCACATCCATCTGTGTCTCTGAGGCAAGCAACATACACACTGTTGGAGTATTTTCAT
CCCTTTCAACAGTCACCATTTCGTTTTGCAATGCACTGTTGAGTCTTGATGAGTTCTTTATGCCCGCTTATATGCCTTTC
GTGAAGACCATTGATGTGTTATTTTGCAAGGAATTAGCATTACTGCCAGTTCATGAGCTCCACCTTTTTTCTCGCTTGGA
GAAGCTATGTATTAGAAACTGTCCCAAGTTGAATATGCAGAGGAGAATGACATTACCATCCTCTCTTCGGATGCTCAGCT
TATTACTTTGTCCAAGCATAGAGTACATCGACAACAGCCATCTGGCGAGTGCAATGAAACTCAAGGGACTTAGCCTTCAA
CTTATGAGGTGTCCAGACCTCATCTCTATTGTTGGTGCTATATCTGTCTCTGAAATAGTGCAGGGTCGTATAGAAGATTG
CCCCAAGCTGATGGAGATAACACAACCTTTTAAGGTCATGACTGAGAGCCAAAAGAAAGTGCAGCCTGATCAGACCATGG
GT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26258.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis