Browse Element(s) Details


OsAffx.15079.1.S1_at

Description tigr:9633.m04014
TID=OsAffx.15079.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=polyprotein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4319011/11hypothetical protein
LOC_Os04g306301/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43170Os.28096.1.S1_at11/115+24971502..24975853Calreticulin-3 precursor, putative, expressed
LOC_Os05g43170Os.18169.1.S1_at1/115+24971502..24975853Calreticulin-3 precursor, putative, expressed
LOC_Os05g43174Os.55242.1.S1_x_at11/115+24980177..24980799expressed protein
LOC_Os05g43174Os.51264.1.S1_x_at1/115+24980177..24980799expressed protein
LOC_Os05g43180OsAffx.15078.1.S1_at11/115+24988983..24989775hypothetical protein
LOC_Os05g43190OsAffx.15079.1.S1_at11/115+24994767..24995051hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15079.1.S1_at--393--4132Chr05:24994973..24994997 (25 bp)
CGCAGGTCTCGATCTAATCTGACTT
LOC_Os05g43190
OsAffx.15079.1.S1_at--935--6411Chr05:24994963..24994987 (25 bp)
GATCTAATCTGACTTTGGCTCATAT
LOC_Os05g43190
OsAffx.15079.1.S1_at--798--8311Chr05:24994947..24994971 (25 bp)
GGCTCATATTGAATCTGGCTCCAGG
LOC_Os05g43190
OsAffx.15079.1.S1_at--951--4771Chr05:24994930..24994954 (25 bp)
GCTCCAGGGAGGTCGGTGTTATCTT
LOC_Os05g43190
OsAffx.15079.1.S1_at--1090--7731Chr05:24994916..24994940 (25 bp)
GGTGTTATCTTCCAGCCACTCGGAT
LOC_Os05g43190
OsAffx.15079.1.S1_at--81--9451Chr05:24994897..24994921 (25 bp)
TCGGATCTTGCTCATCTACCGAGAT
LOC_Os05g43190
OsAffx.15079.1.S1_at--312--9971Chr05:24994881..24994905 (25 bp)
TACCGAGATCGCCAGCTATCTCAGC
LOC_Os05g43190
OsAffx.15079.1.S1_at--32--10171Chr05:24994865..24994889 (25 bp)
TATCTCAGCCCTTCAAGCAATGGCT
LOC_Os05g43190
OsAffx.15079.1.S1_at--37--2971Chr05:24994847..24994871 (25 bp)
AATGGCTCTTGTGCGAACACCGAGA
LOC_Os05g43190
OsAffx.15079.1.S1_at--255--2171Chr05:24994831..24994855 (25 bp)
ACACCGAGACCATCAACTACAGCGA
LOC_Os05g43190
OsAffx.15079.1.S1_at--35--1911Chr05:24994807..24994831 (25 bp)
ACGTCGACGATGAGTACGACTTCGA
LOC_Os05g43190
Target Sequence 
CGCAGGTCTCGATCTAATCTGACTTTGGCTCATATTGAATCTGGCTCCAGGGAGGTCGGTGTTATCTTCCAGCCACTCGG
ATCTTGCTCATCTACCGAGATCGCCAGCTATCTCAGCCCTTCAAGCAATGGCTCTTGTGCGAACACCGAGACCATCAACT
ACAGCGACGTCGACGATGAGTACGACTTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15079.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis