Browse Element(s) Details


OsAffx.3958.1.S1_at

Description tigr:9632.m02909
TID=OsAffx.3958.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3067010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g30650Os.46012.2.S1_x_at5/114+18117513..18123196retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g30650Os.27088.1.A1_x_at4/114+18117513..18123196retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g30650Os.46012.3.S1_x_at3/114+18117513..18123196retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g30650Os.46012.3.S1_at2/114+18117513..18123196retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g30660OsAffx.26258.1.S1_at11/114+18131253..18135073NB-ARC domain containing protein, expressed
LOC_Os04g30670OsAffx.3958.1.S1_at10/114+18140203..18141790hypothetical protein
LOC_Os04g30680OsAffx.26257.1.S1_at11/114+18151090..18151467hypothetical protein
LOC_Os04g30680OsAffx.6583.1.S1_at1/114+18151090..18151467hypothetical protein
LOC_Os04g30690OsAffx.26258.2.S1_at11/114+18153480..18157126NB-ARC domain containing protein
LOC_Os04g30700NANA4+18166293..18169244hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3958.1.S1_at--1057--9131Chr04:18140233..18140257 (25 bp)
TGCGTGCTCAGGGAGGAACTTGTCA
LOC_Os04g30670
OsAffx.3958.1.S1_at--1014--1371Chr04:18140268..18140292 (25 bp)
AGACCAATGTGGAGCTATCAACAGA
LOC_Os04g30670
OsAffx.3958.1.S1_at--823--991Chr04:18140314..18140338 (25 bp)
AGGATGGTTCAAACCTCTACCGAGA
LOC_Os04g30670
OsAffx.3958.1.S1_at--563--9531Chr04:18140329..18140353 (25 bp)
TCTACCGAGAGGTTCCAGCGCATGC
LOC_Os04g30670
OsAffx.3958.1.S1_at--693--4351Chr04:18140343..18140367 (25 bp)
CCAGCGCATGCTGAATGCCAATCTT
LOC_Os04g30670
OsAffx.3958.1.S1_at--1133--9731NONE
TAATTGTCTCGACAGTTCTAGTGAT
NONE
OsAffx.3958.1.S1_at--1024--1471Chr04:18141577..18141601 (25 bp)
AGAATATTCTCTTGTTGCTAAGCTT
LOC_Os04g30670
OsAffx.3958.1.S1_at--455--6671Chr04:18141590..18141614 (25 bp)
GTTGCTAAGCTTCTAGGTGAAACCA
LOC_Os04g30670
OsAffx.3958.1.S1_at--887--8031Chr04:18141653..18141677 (25 bp)
GGAGTCATCGATACCACAAACTACA
LOC_Os04g30670
OsAffx.3958.1.S1_at--770--10811Chr04:18141687..18141711 (25 bp)
TTGTGCAGCATGTGCTAAGCATTCA
LOC_Os04g30670
OsAffx.3958.1.S1_at--29--10511Chr04:18141708..18141732 (25 bp)
TTCAAGTGGAGCATGCGCAGGAACT
LOC_Os04g30670
Target Sequence 
TGCGTGCTCAGGGAGGAACTTGTCAAAGTCCTCAAAGACCAATGTGGAGCTATCAACAGAGATATGACTGTTGTGATCGA
GAGGATGGTTCAAACCTCTACCGAGAGGTTCCAGCGCATGCTGAATGCCAATCTTACAACGATCAATAATTGTCTCGACA
GTTCTAGTGATGTTGAGGAAGAATATTCTCTTGTTGCTAAGCTTCTAGGTGAAACCAATGATCCTGAGATGGAAAATGAT
GATGGGGAGATTTTAGGAGTCATCGATACCACAAACTACAAGACTATACTTGTGCAGCATGTGCTAAGCATTCAAGTGGA
GCATGCGCAGGAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3958.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis