Browse Element(s) Details


Os.46012.3.S1_at

Description gb:NM_187284.1
DB_XREF= gi:34901653
GEN=P0640E12.21
TID=Os.46012.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46012 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0640E12.21 (P0640E12.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0640E12.21 (P0640E12.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g294908/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g108904/11retrotransposon protein, putative, unclassified
LOC_Os12g124804/11retrotransposon protein, putative, unclassified
LOC_Os02g214004/11retrotransposon protein, putative, unclassified
LOC_Os10g030004/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g230604/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g288104/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g226704/11retrotransposon protein, putative, unclassified
LOC_Os11g357304/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g374004/11retrotransposon protein, putative, unclassified
LOC_Os08g285204/11retrotransposon protein, putative, unclassified
LOC_Os06g306704/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g192302/11retrotransposon protein, putative, unclassified
LOC_Os04g306502/11retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os09g101002/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g179902/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g29460NANA7+17299579..17303314retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g29470Os.45957.4.S1_x_at6/117+17303576..17304803retrotransposon protein, putative, unclassified
LOC_Os07g29480OsAffx.10091.1.S1_at11/117+17305202..17306560transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29490Os.46012.3.S1_x_at11/117+17313852..17314870retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g29490Os.46012.2.S1_x_at8/117+17313852..17314870retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g29490Os.46012.3.S1_at8/117+17313852..17314870retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g29490Os.27088.1.A1_x_at4/117+17313852..17314870retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g29500Os.39431.1.S1_x_at11/117+17316285..17320113retrotransposon, putative, centromere-specific
LOC_Os07g29500Os.39431.1.S1_at11/117+17316285..17320113retrotransposon, putative, centromere-specific
LOC_Os07g29500OsAffx.25367.1.S1_at1/117+17316285..17320113retrotransposon, putative, centromere-specific
LOC_Os07g29510NANA7+17322638..17323463hypothetical protein
LOC_Os07g29520Os.49985.1.S1_at1/117+17328358..17332727retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g29530OsAffx.28659.1.S1_at11/117+17333241..17333705hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46012.3.S1_at--494--2191Chr07:17314688..17314712 (25 bp)
ACAAAGCCAATTGATATTCGCTTTC
LOC_Os07g29490
Os.46012.3.S1_at--251--3291Chr07:17314689..17314713 (25 bp)
CAAAGCCAATTGATATTCGCTTTCA
LOC_Os07g29490
Os.46012.3.S1_at--170--2331Chr07:17314690..17314714 (25 bp)
AAAGCCAATTGATATTCGCTTTCAC
LOC_Os07g29490
Os.46012.3.S1_at--731--2651Chr07:17314691..17314715 (25 bp)
AAGCCAATTGATATTCGCTTTCACT
LOC_Os07g29490
Os.46012.3.S1_at--977--16924Chr11:20475652..20475671 (20 bp)
AGCCAATTGATATTCGCTTTCACTT
LOC_Os11g35730
Os.46012.3.S1_at--941--43724Chr11:20475652..20475672 (21 bp)
GCCAATTGATATTCGCTTTCACTTT
LOC_Os11g35730
Os.46012.3.S1_at--940--43720Chr11:20475652..20475673 (22 bp)
CCAATTGATATTCGCTTTCACTTTT
LOC_Os11g35730
Os.46012.3.S1_at--973--31720Chr11:20475652..20475674 (23 bp)
CAATTGATATTCGCTTTCACTTTTT
LOC_Os11g35730
Target Sequence 
ACAAAGCCAATTGATATTCGCTTTCACTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46012.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis