Browse Element(s) Details


Os.22815.1.S1_at

Description gb:AK112050.1
DB_XREF= gi:37988713
TID=Os.22815.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.22815 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-102-D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-102-D04, full insert sequence.
FL= gb:AK112050.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3076011/113-oxoacyl-reductase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g30710Os.2741.4.S1_x_at6/114+18169767..18171331hypothetical protein
LOC_Os04g30720Os.49553.1.S1_at10/114+18173878..18178813Kinesin motor domain containing protein, expressed
LOC_Os04g30730Os.12817.1.S1_at10/114+18181823..1818374460S ribosomal protein L35, putative, expressed
LOC_Os04g30740Os.54218.1.S1_at11/114+18184245..18188169Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os04g30750OsAffx.14053.1.S1_at11/114+18190528..18192911expressed protein
LOC_Os04g30760Os.22815.1.S1_at11/114+18195311..182002503-oxoacyl-reductase, chloroplast precursor, putative, expressed
LOC_Os04g30770OsAffx.14054.1.S1_at11/114+18205252..18206991Glycosyl hydrolases family 18 protein, expressed
LOC_Os04g30780Os.8580.1.S1_at11/114+18213820..18218312Mov34/MPN/PAD-1 family protein, expressed
LOC_Os04g30790Os.22695.1.S1_s_at11/114+18219938..18223014expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004316molecular_function3-oxoacyl-[acyl-carrier protein] reductase activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22815.1.S1_at--1018--3431Chr04:18196280..18196304 (25 bp)
CAGTTGTTGGTCTTGTTGGTAATAT
LOC_Os04g30760
Os.22815.1.S1_at--3--231Chr04:18196259..18196283 (25 bp)
ATATTGGCCAAGCTAATTACAGTGC
LOC_Os04g30760
Os.22815.1.S1_at--699--9711Chr04:18196246..18196270 (25 bp)
TAATTACAGTGCTGCCAAGGCTGGG
LOC_Os04g30760
Os.22815.1.S1_at--763--4711Chr04:18195737..18195761 (25 bp)
GCTGGCTTGGTTGAGTTTTTGGCTC
LOC_Os04g30760
Os.22815.1.S1_at--447--9671Chr04:18195607..18195715 (25 bp)
TCACGGGACAGGTTCTTACCATCGA
LOC_Os04g30760
Os.22815.1.S1_at--508--6251Chr04:18195576..18195600 (25 bp)
GATGGTGATGTAGGTCGTAACGCTT
LOC_Os04g30760
Os.22815.1.S1_at--942--10071Chr04:18195566..18195590 (25 bp)
TAGGTCGTAACGCTTGACAGAGAAA
LOC_Os04g30760
Os.22815.1.S1_at--727--9851Chr04:18195504..18195528 (25 bp)
TACAGAGTTAGGTCTTTCGTCCCTT
LOC_Os04g30760
Os.22815.1.S1_at--831--9531Chr04:18195492..18195516 (25 bp)
TCTTTCGTCCCTTGATTTGTAAACA
LOC_Os04g30760
Os.22815.1.S1_at--50--8771Chr04:18195449..18195473 (25 bp)
TGTTGGAAGTTCAGATACGTGTTTG
LOC_Os04g30760
Os.22815.1.S1_at--31--331Chr04:18195435..18195459 (25 bp)
ATACGTGTTTGAAGGATGTTCTGAT
LOC_Os04g30760
Target Sequence 
CAGTTGTTGGTCTTGTTGGTAATATTGGCCAAGCTAATTACAGTGCTGCCAAGGCTGGGGTTATTGGTTTGACGAAANCA
GTAGCTAGGGAATATGCAAGCAGAAATATCANTGTGAATGCAATTGCACCTGGTTTCATNTGCATCTGACATGACTNNTG
AACTTGGAGAGGATCTTGAGAAGAAAATCTTGTCAANCATCCCATTAGGGAGATATGGCAAACCAGAGGAGGTTGCTGGC
TTGGTTGAGTTTTTGGCTCTCAATCCTGCGGNCAACTACATCACGGGACAGGTTCTTACCATCGATGGNAGGGATGGTGA
TGTAGGTCGTAACGCTTGACAGAGAAAGGATTNGTTTTACATAATGTTTGCNAATGATTTTGGACTACAGAGTTAGGTCT
TTCGTCCCTTGATTTGTAAACANCAGTGAATAAAATTAGGTGTTGGAAGTTCAGATACGTGTTTGAAGGATGTTCTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22815.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis