Browse Element(s) Details


OsAffx.26256.1.S1_at

Description tigr:9632.m02898
TID=OsAffx.26256.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3056011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g30510OsAffx.14049.1.S1_at11/114+18042450..18043328hypothetical protein
LOC_Os04g30520OsAffx.3953.1.S1_at11/114+18050214..18050642hypothetical protein
LOC_Os04g30530NANA4+18060058..18063002NB-ARC domain containing protein, expressed
LOC_Os04g30540OsAffx.14050.1.S1_at11/114+18063778..18064869Leucine Rich Repeat family protein
LOC_Os04g30550OsAffx.3955.1.S1_at11/114+18067132..18067888GDP-mannose 4,6 dehydratase 1, putative
LOC_Os04g30560OsAffx.26256.1.S1_at11/114+18068110..18068565hypothetical protein
LOC_Os04g30570OsAffx.16783.1.S1_x_at11/114+18070685..18072098HCBT-like putative defense response protein, putative
LOC_Os04g30580NANA4+18073642..18076973transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g30590Os.14491.2.S1_x_at4/114+18079526..18083223transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g30590Os.47463.1.S1_x_at3/114+18079526..18083223transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g30600OsAffx.3956.1.S1_at11/114+18086346..18086837HCBT-like putative defense response protein, putative
LOC_Os04g30610OsAffx.26258.3.S1_at11/114+18091907..18094112NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26256.1.S1_at--16--7131Chr04:18068509..18068533 (25 bp)
GTCATGGCAGCAACGGATGTGGTAT
LOC_Os04g30560
OsAffx.26256.1.S1_at--996--1951Chr04:18068463..18068487 (25 bp)
ACTGGTCTCACTGCTCTGATGTGGG
LOC_Os04g30560
OsAffx.26256.1.S1_at--952--2851Chr04:18068430..18068454 (25 bp)
AAGTGCTCCGCCGTGGAAGCCATCG
LOC_Os04g30560
OsAffx.26256.1.S1_at--951--3531Chr04:18068410..18068434 (25 bp)
CATCGTCGTCGAGGTAGACCCAGAC
LOC_Os04g30560
OsAffx.26256.1.S1_at--194--4193Chr01:23407490..23407510 (21 bp)
CCCGGATGAAGCAGGGCTCTCAAGA
NONE
OsAffx.26256.1.S1_at--372--8031Chr04:18068307..18068331 (25 bp)
GGAGGTGCTTCCTGCAGGATCCGCT
LOC_Os04g30560
OsAffx.26256.1.S1_at--54--8652Chr04:18068219..18068243 (25 bp)
TGGGAGCGAATGACCGATGCCGATT
LOC_Os04g30560
OsAffx.26256.1.S1_at--869--6351Chr04:18068204..18068228 (25 bp)
GATGCCGATTTTGCTATTTTGCTGA
LOC_Os04g30560
OsAffx.26256.1.S1_at--342--10211Chr04:18068190..18068214 (25 bp)
TATTTTGCTGATTTGGGCCGAGCGC
LOC_Os04g30560
OsAffx.26256.1.S1_at--869--1651Chr04:18068170..18068194 (25 bp)
AGCGCGAGCCAGTTTGGCTGCCACA
LOC_Os04g30560
OsAffx.26256.1.S1_at--328--4111Chr04:18068140..18068164 (25 bp)
CGCTTTCGTTCGATGCGGTGTCCAA
LOC_Os04g30560
Target Sequence 
GTCATGGCAGCAACGGATGTGGTATCGTGGCAGCGCGACCCCTGTCACTGGTCTCACTGCTCTGATGTGGGTGGTGGTGA
AGTGCTCCGCCGTGGAAGCCATCGTCGTCGAGGTAGACCCAGACGAGGCAGATCCCCCGGATGAAGCAGGGCTCTCAAGA
GGCGCGAGGAGGCGATTGACGGGGAGGTGGCTGACAACGAGGGGAGGTGCTTCCTGCAGGATCCGCTCCACCAGCGCTTG
GGCCGGAGGAGACGACGAGGAGCGGTCACCGGCTGACGGCCTTGAGGAATTGGGAGCGAATGACCGATGCCGATTTTGCT
ATTTTGCTGATTTGGGCCGAGCGCGAGCCAGTTTGGCTGCCACACTCCGCGCTTTCGTTCGATGCGGTGTCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26256.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis