Browse Element(s) Details


OsAffx.26258.3.S1_at

Description tigr:9632.m02903
TID=OsAffx.26258.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3061011/11NB-ARC domain containing protein
LOC_Os10g067401/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g30550OsAffx.3955.1.S1_at11/114+18067132..18067888GDP-mannose 4,6 dehydratase 1, putative
LOC_Os04g30560OsAffx.26256.1.S1_at11/114+18068110..18068565hypothetical protein
LOC_Os04g30570OsAffx.16783.1.S1_x_at11/114+18070685..18072098HCBT-like putative defense response protein, putative
LOC_Os04g30580NANA4+18073642..18076973transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g30590Os.14491.2.S1_x_at4/114+18079526..18083223transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g30590Os.47463.1.S1_x_at3/114+18079526..18083223transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g30600OsAffx.3956.1.S1_at11/114+18086346..18086837HCBT-like putative defense response protein, putative
LOC_Os04g30610OsAffx.26258.3.S1_at11/114+18091907..18094112NB-ARC domain containing protein
LOC_Os04g30620Os.49553.1.S1_at4/114+18099671..18103286retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g30620OsAffx.20387.1.S1_x_at1/114+18099671..18103286retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g30630OsAffx.15079.1.S1_at1/114+18105041..18109712retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g30640NANA4+18111091..18111381retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g30650Os.46012.2.S1_x_at5/114+18117513..18123196retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g30650Os.27088.1.A1_x_at4/114+18117513..18123196retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g30650Os.46012.3.S1_x_at3/114+18117513..18123196retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g30650Os.46012.3.S1_at2/114+18117513..18123196retrotransposon protein, putative, Ty1-copia subclass, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006952biological_processdefense response
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26258.3.S1_at--690--2391Chr04:18092834..18092858 (25 bp)
AAACTATGTGCATTCGGATCCGTCC
LOC_Os04g30610
OsAffx.26258.3.S1_at--407--7331Chr04:18092841..18092865 (25 bp)
GTGCATTCGGATCCGTCCAGAGTTG
LOC_Os04g30610
OsAffx.26258.3.S1_at--784--6051Chr04:18092860..18092884 (25 bp)
GAGTTGGAGCAACAGTTGTCGCAAC
LOC_Os04g30610
OsAffx.26258.3.S1_at--501--6631Chr04:18092874..18092898 (25 bp)
GTTGTCGCAACAGGCCAGAGCTGGA
LOC_Os04g30610
OsAffx.26258.3.S1_at--469--4711Chr04:18092893..18092917 (25 bp)
GCTGGAGCGCATTGGTGAAGCTATA
LOC_Os04g30610
OsAffx.26258.3.S1_at--768--9751Chr04:18093069..18093093 (25 bp)
TAAGTTACGTTTACCTGCCACAGGA
LOC_Os04g30610
OsAffx.26258.3.S1_at--1094--5031Chr04:18093161..18093185 (25 bp)
GCAGATATTTCGGTAGCACAAGGTT
LOC_Os04g30610
OsAffx.26258.3.S1_at--746--7511Chr04:18093188..18093212 (25 bp)
GTGGAGCTTGAAAATGCACCCTCTT
LOC_Os04g30610
OsAffx.26258.3.S1_at--162--2292Chr10:3487076..3487170 (24 bp)
AAATGCACCCTCTTGCTTTGATGAC
LOC_Os10g06740
OsAffx.26258.3.S1_at--670--1131Chr04:18094032..18094056 (25 bp)
AGTCTATCATTCTTTGAACCACAGT
LOC_Os04g30610
OsAffx.26258.3.S1_at--360--5431Chr04:18094047..18094071 (25 bp)
GAACCACAGTTTCCTGATTCAGAAG
LOC_Os04g30610
Target Sequence 
AAACTATGTGCATTCGGATCCGTCCAGAGTTGGAGCAACAGTTGTCGCAACAGGCCAGAGCTGGAGCGCATTGGTGAAGC
TATACTTCCCAAGTTGAAGGGTTCACCTTTGGCCGCCAAAACTCTTGGACACTTATTGAAAAGCAACCTAAGCATAGAGC
ACTGGGAGGACATATTGAAAAGTGAGCTATGGCGATTAGAACAAGAGGAGACTGACATTTTGCCAGCCCTTCGACTAAGT
TACGTTTACCTGCCACAGGACATAAAAAGATGCTTCTCAATCTGTGCCATGTATCCAAAGGATCACAAATTTGAAAAGGA
TTTTCTAGCAGATATTTCGGTAGCACAAGGTTATGTGGAGCTTGAAAATGCACCCTCTTGCTTTGATGACCTTTTAAATC
GGTCATTCTTTCAGAAAGCAGCTGGTGAGCATGGTACGTATGTAATTCATGACTTGATGCATGATACTGCACAGCTAGTC
TCTAAAGATGAGTGCTTCATCATACAACATAGTCTATCATTCTTTGAACCACAGTTTCCTGATTCAGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26258.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis