Browse Element(s) Details


OsAffx.3955.1.S1_at

Description tigr:9632.m02897
TID=OsAffx.3955.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to gdp-mannose 4,6 dehydratase (ec 4.2.1.47) (gdp-d-mannose dehydratase) (gmd). (mouse-ear cress
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3055011/11GDP-mannose 4,6 dehydratase 1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g30510OsAffx.14049.1.S1_at11/114+18042450..18043328hypothetical protein
LOC_Os04g30520OsAffx.3953.1.S1_at11/114+18050214..18050642hypothetical protein
LOC_Os04g30530NANA4+18060058..18063002NB-ARC domain containing protein, expressed
LOC_Os04g30540OsAffx.14050.1.S1_at11/114+18063778..18064869Leucine Rich Repeat family protein
LOC_Os04g30550OsAffx.3955.1.S1_at11/114+18067132..18067888GDP-mannose 4,6 dehydratase 1, putative
LOC_Os04g30560OsAffx.26256.1.S1_at11/114+18068110..18068565hypothetical protein
LOC_Os04g30570OsAffx.16783.1.S1_x_at11/114+18070685..18072098HCBT-like putative defense response protein, putative
LOC_Os04g30580NANA4+18073642..18076973transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g30590Os.14491.2.S1_x_at4/114+18079526..18083223transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g30590Os.47463.1.S1_x_at3/114+18079526..18083223transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g30600OsAffx.3956.1.S1_at11/114+18086346..18086837HCBT-like putative defense response protein, putative
LOC_Os04g30610OsAffx.26258.3.S1_at11/114+18091907..18094112NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0009225biological_processnucleotide-sugar metabolism
GO:0009826biological_processunidimensional cell growth
GO:0042351biological_process'de novo' GDP-L-fucose biosynthesis
GO:0008446molecular_functionGDP-mannose 4,6-dehydratase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3955.1.S1_at--914--9271Chr04:18067172..18067196 (25 bp)
TCCGTTGCGTGCTTGATCACATCCT
LOC_Os04g30550
OsAffx.3955.1.S1_at--1095--751Chr04:18067232..18067256 (25 bp)
ATGTCGCGTTGTCCTTCGAGGTGCC
LOC_Os04g30550
OsAffx.3955.1.S1_at--1096--9211Chr04:18067369..18067393 (25 bp)
TCCACGCCACCACTACAAAGTGAGT
LOC_Os04g30550
OsAffx.3955.1.S1_at--849--9871Chr04:18067670..18067692 (23 bp)
TACAGGACCAGCACAGCGACTACGT
LOC_Os04g30550
OsAffx.3955.1.S1_at--954--1631Chr04:18067682..18067706 (25 bp)
AGCGACTACGTCGTAGCCACCAAGG
LOC_Os04g30550
OsAffx.3955.1.S1_at--1101--9711Chr04:18067719..18067743 (25 bp)
TCAAGGAATTCCTCTTGGCCATCTT
LOC_Os04g30550
OsAffx.3955.1.S1_at--910--1171Chr04:18067748..18067772 (25 bp)
AGTAGCAGCTCCGTCAGGTGGCTCC
LOC_Os04g30550
OsAffx.3955.1.S1_at--695--1051Chr04:18067763..18067787 (25 bp)
AGGTGGCTCCTGTCATGCCTCGTGA
LOC_Os04g30550
OsAffx.3955.1.S1_at--650--3871Chr04:18067772..18067796 (25 bp)
CTGTCATGCCTCGTGATGCTGGTCA
LOC_Os04g30550
OsAffx.3955.1.S1_at--1056--5831Chr04:18067804..18067828 (25 bp)
GACCTTCCACGATGGCACCAGGGAA
LOC_Os04g30550
OsAffx.3955.1.S1_at--186--8511Chr04:18067816..18067840 (25 bp)
TGGCACCAGGGAATGCAGCATCAAT
LOC_Os04g30550
Target Sequence 
TCCGTTGCGTGCTTGATCACATCCTCCTCGACGAGGTCTACAACCTCACCGCGCAGTGCCATGTCGCGTTGTCCTTCGAG
GTGCCCGACTACACCGCCGACGTCACAGCCACGAGCGCGCTCTGCCTCCTCGAGGCCGTCCACCTCGCCCACAAGCCCAT
TCGCTACTACCAGGCGGTCCCCTCCGAGATGTTCGGCTCCACGCCACCACTACAAAGTGAGTCCTCCCCCTTCCACCCAT
GGTCCCCTACACCGTCGCCAATTCGCCGCCCTCTACAGGACCAGCACAGCGACTACGTCGTAGCCACCAAGGAGTCCCAC
ACCGTCAAGGAATTCCTCTTGGCCATCTTCCCCAGTAGCAGCTCCGTCAGGTGGCTCCTGTCATGCCTCGTGATGCTGGT
CACCAAGGCGACCTTCCACGATGGCACCAGGGAATGCAGCATCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3955.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis