Browse Element(s) Details


OsAffx.14050.1.S1_at

Description tigr:9632.m02896
TID=OsAffx.14050.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3054011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g30510OsAffx.14049.1.S1_at11/114+18042450..18043328hypothetical protein
LOC_Os04g30520OsAffx.3953.1.S1_at11/114+18050214..18050642hypothetical protein
LOC_Os04g30530NANA4+18060058..18063002NB-ARC domain containing protein, expressed
LOC_Os04g30540OsAffx.14050.1.S1_at11/114+18063778..18064869Leucine Rich Repeat family protein
LOC_Os04g30550OsAffx.3955.1.S1_at11/114+18067132..18067888GDP-mannose 4,6 dehydratase 1, putative
LOC_Os04g30560OsAffx.26256.1.S1_at11/114+18068110..18068565hypothetical protein
LOC_Os04g30570OsAffx.16783.1.S1_x_at11/114+18070685..18072098HCBT-like putative defense response protein, putative
LOC_Os04g30580NANA4+18073642..18076973transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g30590Os.14491.2.S1_x_at4/114+18079526..18083223transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g30590Os.47463.1.S1_x_at3/114+18079526..18083223transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g30600OsAffx.3956.1.S1_at11/114+18086346..18086837HCBT-like putative defense response protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14050.1.S1_at--225--10211Chr04:18064320..18064344 (25 bp)
TATTTATCAGTGTAGCTCCCTCACA
LOC_Os04g30540
OsAffx.14050.1.S1_at--497--1111Chr04:18064405..18064429 (25 bp)
AGTGTCACCATTTCTCTTTGCAATG
LOC_Os04g30540
OsAffx.14050.1.S1_at--1028--10471Chr04:18064516..18064540 (25 bp)
TTACTGCCGATTGATGAGCTTCATC
LOC_Os04g30540
OsAffx.14050.1.S1_at--460--10531Chr04:18064535..18064559 (25 bp)
TTCATCGCTTTTCTTGCTTGGAGGT
LOC_Os04g30540
OsAffx.14050.1.S1_at--114--7331Chr04:18064558..18064582 (25 bp)
GTGCTACGTATTGAATCATGTCCCA
LOC_Os04g30540
OsAffx.14050.1.S1_at--991--3731Chr04:18064619..18064643 (25 bp)
CTCTTCGGAAGCTCAGTTTACTCGG
LOC_Os04g30540
OsAffx.14050.1.S1_at--1007--6811Chr04:18064634..18064658 (25 bp)
GTTTACTCGGTTGTCCAAGCATAGA
LOC_Os04g30540
OsAffx.14050.1.S1_at--661--3551Chr04:18064675..18064699 (25 bp)
CATCTGGCGAGTTCTGTGACACTCA
LOC_Os04g30540
OsAffx.14050.1.S1_at--397--7631Chr04:18064701..18064725 (25 bp)
GGGACTCAACCTGAAACTTGTTAGC
LOC_Os04g30540
OsAffx.14050.1.S1_at--890--2391Chr04:18064714..18064738 (25 bp)
AAACTTGTTAGCTGTCCAGACCTCA
LOC_Os04g30540
OsAffx.14050.1.S1_at--29--6251Chr04:18064806..18064830 (25 bp)
GATGGAGATGACACAGCCTTTCACA
LOC_Os04g30540
Target Sequence 
TATTTATCAGTGTAGCTCCCTCACATCCATCTATGTCTCAGAGGCAAGCAGCAGGCACCCTGTTGGAGTATTTTCATCCC
TTTCAAGTGTCACCATTTCTCTTTGCAATGCACTGTTGAGTCTTGATGAGTTCCTGATGCCTGCTTATATGCCCGTCGTG
AAGACCATTCTTGTGGAAAGTTGTCGACAATTAGCATTACTGCCGATTGATGAGCTTCATCGCTTTTCTTGCTTGGAGGT
GCTACGTATTGAATCATGTCCCAATTTGAATACACGGAGGATAATGACATTACCATCCTCTCTTCGGAAGCTCAGTTTAC
TCGGTTGTCCAAGCATAGAGTTCATCGACAACAGCCATCTGGCGAGTTCTGTGACACTCAAGGGACTCAACCTGAAACTT
GTTAGCTGTCCAGACCTCATCTCTATTGTTGGTGCTATATCTATCTCTGAAATACAGTCGGGTTATATACATGATTGCCC
CAAGCTGATGGAGATGACACAGCCTTTCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14050.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis